PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG275100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 214aa    MW: 21416.8 Da    PI: 8.4624
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG275100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35e-151666155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++y+GVr +  +g+Wv+eIr+p +   r r +lg++  +e Aa a++aa+  l+g
  Pavir.9NG275100.1.p 16 CRYRGVRCRA-WGKWVSEIRVPGT---RERLWLGSYAAPEAAAVAHDAAACLLRG 66
                         78****9655.**********943...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.9E-81666IPR001471AP2/ERF domain
CDDcd000187.91E-121680No hitNo description
Gene3DG3DSA:3.30.730.104.5E-241780IPR001471AP2/ERF domain
SMARTSM003803.4E-241785IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-151770IPR016177DNA-binding domain
PROSITE profilePS5103219.6381779IPR001471AP2/ERF domain
PRINTSPR003674.4E-71829IPR001471AP2/ERF domain
PRINTSPR003674.4E-74056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSRAAGTGRG GPERRCRYRG VRCRAWGKWV SEIRVPGTRE RLWLGSYAAP EAAAVAHDAA  60
ACLLRGLPGA AAAGHLNFPE RAACYAYGGA PPLSPRSVQR VASDAGMAAD AQLVDARAAL  120
ASSSPSRPPP PLEAAAAGAA SFGIGASIGG EGAVAQGSAY APAPARYSNC SSGGSSTYWY  180
TPSAGGGSGS SSAGSDQQLV YGDISVDDIE ILM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG275100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962047.11e-58ethylene-responsive transcription factor RAP2-1-like
TrEMBLA0A3L6R7C94e-64A0A3L6R7C9_PANMI; Ethylene-responsive transcription factor RAP2-1-like
STRINGPavir.J32663.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.14e-13ERF family protein