PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG273800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 456aa    MW: 50098.9 Da    PI: 4.285
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG273800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.14.9e-5161331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtd elv++yLk+k+ gkkl + ++i+evd+yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nrat +gyWk++gk
  Pavir.9NG273800.1.p   6 LPPGFRFHPTDVELVSYYLKRKIMGKKLIV-DAISEVDLYKFPPWDLPdKsSLRSKDLEWFFFCPRDKKYPNGSRTNRATPNGYWKTSGK 94 
                          79*************************988.89**************95335666777******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++++  ++++vg+kktL+f++g+apkg +tdWvm ey++
  Pavir.9NG273800.1.p  95 DRTIIL-NSRVVGMKKTLIFHEGKAPKGDRTDWVMYEYKM 133
                          ******.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-623156IPR003441NAC domain
PROSITE profilePS5100557.8746156IPR003441NAC domain
PfamPF023653.2E-267132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MAQTSLPPGF RFHPTDVELV SYYLKRKIMG KKLIVDAISE VDLYKFPPWD LPDKSSLRSK  60
DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRTIIL NSRVVGMKKT LIFHEGKAPK  120
GDRTDWVMYE YKMEDEDLVS AGFSKDAFVL CKIFKKSGLG PRIGEQYGAP FNEAEWDNAE  180
AETSMFPLMT SSEVVNPMEG PHAQHAVPAG AVREPPLQNA SVACVGEESS FDHGTATTSV  240
EDLAFGYAIA GSAIQDIPAQ QSVDGVVSGI NLSNGVNDMY SSHDCDGFLL EELSRFLNDS  300
PRLNITLGES SGLPPMSEAE AHAFEVNTFG PYNELSGFAG LEDVPNNFSA SNVAATDYMV  360
LPPDRELSTD DFIELNDLLA SDPSFPSEFP AQNSQFMQYC PAQPTYNGHY DVATLPGPVE  420
PTMPSIFDGF PPDNGGFTSD EAANFSYPTM QYPFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-52215711169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.3490.0callus| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG273800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806086.10.0NAC domain-containing protein 82-like isoform X1
TrEMBLA0A270R5560.0A0A270R556_9POAL; Uncharacterized protein
TrEMBLA0A2T7EDK30.0A0A2T7EDK3_9POAL; Uncharacterized protein
STRINGPavir.J02083.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.18e-84NAC domain containing protein 103