PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG255100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 27469.5 Da PI: 8.6329 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.5e-15 | 4 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+++ ++++G g +W + ++t+g++R++ +c+srw++yl Pavir.9NG255100.1.p 4 KGKWSKEEDALIKNHIEKYGVGrSWQALSNTLGLRRCGRSCRSRWLNYL 52 79******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 36.6 | 1.1e-11 | 59 | 101 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+ E+ ++ d ++G+ W+ Ia+ ++ gRt+ +k++w++ Pavir.9NG255100.1.p 59 GNFTPAEERIICDMYSKMGSC-WSVIAAQLP-GRTDLAIKNYWNS 101 89*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.318 | 1 | 56 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-11 | 3 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.54E-25 | 3 | 99 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.9E-13 | 4 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 5 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.019 | 57 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-11 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-10 | 59 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-8 | 60 | 103 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-21 | 60 | 106 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MMKKGKWSKE EDALIKNHIE KYGVGRSWQA LSNTLGLRRC GRSCRSRWLN YLRSGLKHGN 60 FTPAEERIIC DMYSKMGSCW SVIAAQLPGR TDLAIKNYWN SSLKKKFPAA RTSAAAAYRC 120 RNRPACSTSS DAGTPARDLQ LVSYSSEDST AGPSPAKPVL TGLTPVQAVQ PPVPVVAAQP 180 IPAVPVSGPV KIEQTPPPPP PRACDQTGES VMDIVCAPMS PVPLSIMEPD ELACIYQFDD 240 IDSFLPWFDH H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-23 | 2 | 107 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG255100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661280.1 | 1e-132 | transcription factor RAX2 | ||||
TrEMBL | A0A2S3ILL5 | 1e-141 | A0A2S3ILL5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01569.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12228 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 2e-33 | myb domain protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG255100.1.p |