 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.9NG248800.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
YABBY |
Protein Properties |
Length: 309aa MW: 32060.4 Da PI: 9.0173 |
Description |
YABBY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.9NG248800.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | YABBY | 80.9 | 3.9e-25 | 45 | 93 | 6 | 54 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas 54
+seq+Cyv+C fC+t+l+vsvP++slfk+vtvrCGhC+sll+vn++
Pavir.9NG248800.1.p 45 ASEQLCYVHCHFCDTVLVVSVPTSSLFKTVTVRCGHCSSLLTVNMRGLL 93
79****************************************9998655 PP
|
2 | YABBY | 131.4 | 1.2e-40 | 192 | 257 | 106 | 170 |
YABBY 106 deevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
+e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
Pavir.9NG248800.1.p 192 KEPSPRANPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 257
66788988879*****************************************************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MSSSSSSSSA ASAAAGFPPS PPPLLVENLP PLHQQLTPVA AAPPASEQLC YVHCHFCDTV 60 LVVSVPTSSL FKTVTVRCGH CSSLLTVNMR GLLFPGTPTT NTAAAAPTEV TTAPPPPASS 120 ANNGQFHFPH SLNLAPNPPH QSLLDEISSA NPSLQLLEQH GLGGLIPGGR NAAAPAPAPP 180 PPPAAAGNKG AKEPSPRANP VVNRPPEKRQ RVPSAYNRFI KDEIQRIKAG NPDISHREAF 240 SAAAKNWAHF PHIHFGLMPD HQQGLKKTSL LPQDHHQRKD GLLIKDGLYA AAAAAAAAAA 300 ANMGVAPY*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apex and young inflorescences. {ECO:0000269|PubMed:17216490}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AY330228 | 1e-179 | AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds. |