PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG216300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 287aa    MW: 29332.6 Da    PI: 8.6389
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG216300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001194116123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C + F ++  L  H++ H
  Pavir.9NG216300.1.p  94 FKCNYCQRKFYTSQALGGHQNAH 116
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.36E-791121No hitNo description
PROSITE profilePS5015711.57294121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDKGSSSRTA SMEVEGAGLQ VEDGEEVVQA RGKVHEAPAK ELDLLGAPGS EPPEVKAVEA  60
QEVVPGKGKE KAVVAAEEET KAPASSGGEK KRSFKCNYCQ RKFYTSQALG GHQNAHKRER  120
SLAKRGAAAA AAAAAAAGRG LYGGADPFLP PHHLRFPHAW PYSAGGGRPP ASSSFLGLGR  180
GSAAAAPFYG LHHGWAAHAH AHGQPSMPGL ARYAGAERPV YAPPGYGYGA SSRAPSPAVL  240
DSGMAGLRWA GVASGASAGI DNGGAQEVTQ QQEEAQSGNI DLNLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG216300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822315.11e-143zinc finger protein GIS3-like
TrEMBLA0A2S3I1W91e-142A0A2S3I1W9_9POAL; Uncharacterized protein
TrEMBLA0A2T7D5Q31e-142A0A2T7D5Q3_9POAL; Uncharacterized protein
STRINGPavir.Ia01442.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.13e-14zinc finger protein 4