PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.9NG215900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 730aa MW: 82522.9 Da PI: 6.1891

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG215900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	332.3	9e-102	352	722	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL++cA+avs ++ +la+ +L+ +++++s +gd ++Rla++++ L+arl +++s+ly++l ++ + l++++l + P+ Pavir.9NG215900.1.p 352 LRTLLIHCAQAVSVSNYTLASDILSIIRKNCSISGDDTERLASCLVDCLEARLDGTGSQLYQKLITKFRN---AMGFLKVFQLSLAINPF 438 6789*******************************************************999888877...89999******** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 ++ N++Ile ++g+ +vHiiDf+i G+QWp+L+++La+R++gpp++RiTg+++p++g ++ ++tg+ La++A+ ++vpfe+ Pavir.9NG215900.1.p 439 QMATYHFSNKTILEVTKGKPKVHIIDFGIFLGFQWPSLFEQLAKREDGPPKVRITGIEKPQPGfrPDQMNKNTGHLLAEYASMFNVPFEY 528 ************************************************************9999999***************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 +v +++++e++++e+++++++++l+Vn+ +++++l de+vs++s+r++vL++++ ++Pkv+v+ + +++++ Fl+rf e +++ysalf Pavir.9NG215900.1.p 529 QV-ISSKWETIHVEDFHIEEDDVLIVNCLYRMEQLGDETVSINSARNKVLSTIRMTKPKVFVHGVVNGSYSAPFFLTRFKEVMYHYSALF 617 9.7*********************************************************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d l++++pr++e+r+ +Er + +i nv+aceg++r+er e+++kW++r +aG++++pl+ +++k + ++ ++++d y v e++++l Pavir.9NG215900.1.p 618 DILDKTVPRDNEARMILERDVYLCSILNVIACEGSDRIERPESYKKWKSRNLKAGLEQLPLNPDIVKVTRDVVGQYHKD-YVVGEDDQWL 706 *************************************************************************77.****** PP GRAS 359 vlgWkdrpLvsvSaWr 374 +lgWk+r L ++S W+ Pavir.9NG215900.1.p 707 LLGWKGRILKAISTWK 722 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.304	326	703	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-99	352	722	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MEFNDKSNTN FDDFSSSLLS TSGSYAPSQK FVDPANESND LELFLHPPNS TNYYPPVSST 60 SNDEGHFTSN TSYSSSSKTY APQFCEVSSN VTPDWYGISV ADSSRSSWVN SDITINYINK 120 LLMQEDNDDK VKLHHGEYAL RAMEEPFYKL LGQSRPAYPL LPLCSSDHLN NLDGCMNKSS 180 GQSSSSCSAY MDPTNNHSND NLQAVEAPWS LSDIVKETKH FAQGTHSMER GLDVDGLSVA 240 EERSREKPVN VADKRMDVSS EVQCQNDPHT EDFCLLEGRS TKQLAISFNG PTRDEMFDRV 300 LLFSEHKPMD EGIVLGEKRT NKSAHQNDQG RASSARRRTK GKKQQKKEVV DLRTLLIHCA 360 QAVSVSNYTL ASDILSIIRK NCSISGDDTE RLASCLVDCL EARLDGTGSQ LYQKLITKFR 420 NAMGFLKVFQ LSLAINPFQM ATYHFSNKTI LEVTKGKPKV HIIDFGIFLG FQWPSLFEQL 480 AKREDGPPKV RITGIEKPQP GFRPDQMNKN TGHLLAEYAS MFNVPFEYQV ISSKWETIHV 540 EDFHIEEDDV LIVNCLYRME QLGDETVSIN SARNKVLSTI RMTKPKVFVH GVVNGSYSAP 600 FFLTRFKEVM YHYSALFDIL DKTVPRDNEA RMILERDVYL CSILNVIACE GSDRIERPES 660 YKKWKSRNLK AGLEQLPLNP DIVKVTRDVV GQYHKDYVVG EDDQWLLLGW KGRILKAIST 720 WKPNESYET*

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MEFNDKSNTN FDDFSSSLLS TSGSYAPSQK FVDPANESND LELFLHPPNS TNYYPPVSST  60
SNDEGHFTSN TSYSSSSKTY APQFCEVSSN VTPDWYGISV ADSSRSSWVN SDITINYINK  120
LLMQEDNDDK VKLHHGEYAL RAMEEPFYKL LGQSRPAYPL LPLCSSDHLN NLDGCMNKSS  180
GQSSSSCSAY MDPTNNHSND NLQAVEAPWS LSDIVKETKH FAQGTHSMER GLDVDGLSVA  240
EERSREKPVN VADKRMDVSS EVQCQNDPHT EDFCLLEGRS TKQLAISFNG PTRDEMFDRV  300
LLFSEHKPMD EGIVLGEKRT NKSAHQNDQG RASSARRRTK GKKQQKKEVV DLRTLLIHCA  360
QAVSVSNYTL ASDILSIIRK NCSISGDDTE RLASCLVDCL EARLDGTGSQ LYQKLITKFR  420
NAMGFLKVFQ LSLAINPFQM ATYHFSNKTI LEVTKGKPKV HIIDFGIFLG FQWPSLFEQL  480
AKREDGPPKV RITGIEKPQP GFRPDQMNKN TGHLLAEYAS MFNVPFEYQV ISSKWETIHV  540
EDFHIEEDDV LIVNCLYRME QLGDETVSIN SARNKVLSTI RMTKPKVFVH GVVNGSYSAP  600
FFLTRFKEVM YHYSALFDIL DKTVPRDNEA RMILERDVYL CSILNVIACE GSDRIERPES  660
YKKWKSRNLK AGLEQLPLNP DIVKVTRDVV GQYHKDYVVG EDDQWLLLGW KGRILKAIST  720
WKPNESYET*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-38	336	723	3	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG215900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797096.1	0.0	scarecrow-like protein 9 isoform X2
TrEMBL	A0A2T8I1G6	0.0	A0A2T8I1G6_9POAL; Uncharacterized protein
STRING	Pavir.Ia01445.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-141	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG215900.1.p