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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.9NG209500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
LBD |
Protein Properties |
Length: 234aa MW: 23960.1 Da PI: 7.0781 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.9NG209500.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 91.3 | 1.1e-28 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85
+C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l+a+p ++r+++++sl+yeA+ r+ Pv+G +g+++++++
Pavir.9NG209500.1.p 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRIISPVSGGIGLMWTGNW 91
6*********************9999888899********************************************************** PP
DUF260 86 qleqlkaelallke 99
+l+q++a+++l++e
Pavir.9NG209500.1.p 92 DLCQAAADAVLRGE 105
*******9998776 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR 60 PALFRSLLYE ACGRIISPVS GGIGLMWTGN WDLCQAAADA VLRGESLRAL SAIPAAFTDR 120 DMDGLYGSAG VAASSSSPEN SSSAPPSRKR RNTNGGLAFN AAAAVPACQN PPAGLLQSCE 180 LDLCLTPASP MAGSGRRGCG GASDEYSATT TCEDLQAAGD VEARAPALLN LFN*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK288002 | 1e-142 | AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence. |