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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG205400.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 424aa MW: 47454.9 Da PI: 10.1914 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.6 | 2.5e-14 | 145 | 226 | 15 | 97 |
-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 lv++k++a e+ + + + +tle + ++W +l +r ++ +y+l + Wk+Fv++n+Lk++D+++F+ ++ ++f+ v+++ Pavir.9NG205400.3.p 145 ALVISKSYAVEYFPQ--RAQIITLERPGCkKKWHPRLHIRPNRVGYILCGHWKNFVRDNKLKTNDICIFQPIKGKRFRVIVHLL 226 59**********755..55589999966569******99999999*************************99989999998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 25 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.0E-19 | 121 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-20 | 124 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.96E-18 | 128 | 224 | No hit | No description |
SMART | SM01019 | 6.2E-7 | 130 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.616 | 131 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-13 | 144 | 226 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-9 | 317 | 420 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-8 | 319 | 420 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.056 | 325 | 420 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 6.964 | 367 | 420 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MKCLLSHANS NRKHGMTIIQ IFGSCCCNKD SSCASTKNGL MVREGSANSI DTSRGSSDHA 60 TQSSTNETHE SLSSSEESED SQSESQPSQL GHCNTFSKLW FIPNKRDLNP EQGKKIDDLV 120 KKIQPQFPVL VVRMKKSSAK PGNPALVISK SYAVEYFPQR AQIITLERPG CKKKWHPRLH 180 IRPNRVGYIL CGHWKNFVRD NKLKTNDICI FQPIKGKRFR VIVHLLGEAS THSRARRPRD 240 SNNGSARKQS SAALVHENSS SRDKSPQLNL RLRHRVAKET CASDDPGEPS RPPAFVVLRH 300 TSLTPAQEKT VGEKVKAIQS DVPVFVANVS EEIVGDNGTF SLDFASRYAT PHLPDGKQTP 360 TLSQDGWRKA WRTKMLNGRM LPGELREFAT DNRMRTGDLC LFEPMKEERL AMAVHIIRSE 420 QYS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG205400.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797721.1 | 0.0 | B3 domain-containing protein Os03g0619800-like | ||||
TrEMBL | A0A2T7C3P5 | 0.0 | A0A2T7C3P5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01275.1.p | 0.0 | (Panicum virgatum) |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG205400.3.p |