PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG189800.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 335aa    MW: 36323.6 Da    PI: 6.7281
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG189800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.5e-112331648
                         HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         v+++G + W++I+r+++ gR +kqc++rw ++l
  Pavir.9NG189800.2.p  2 VEMYGDRKWAAISRHLP-GRIGKQCRERWTNHL 33
                         99***************.************996 PP

2Myb_DNA-binding52.11.5e-164383345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                          WT+e+d  l++a+k +G++ W++Iar++  gR+++++k++w+
  Pavir.9NG189800.2.p 43 IWTEEDDMNLIEAHKVYGNR-WSLIARKLE-GRSENSVKNHWN 83
                         6*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001672.82E-9133No hitNo description
PROSITE profilePS5129422.629137IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-14140IPR009057Homeodomain-like
SMARTSM007170.04135IPR001005SANT/Myb domain
PfamPF002491.6E-9233IPR001005SANT/Myb domain
SuperFamilySSF466895.87E-241390IPR009057Homeodomain-like
PROSITE profilePS5129418.5353890IPR017930Myb domain
SMARTSM007172.2E-154088IPR001005SANT/Myb domain
CDDcd001672.51E-134486No hitNo description
PfamPF002493.2E-144483IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-164484IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVEMYGDRKW AAISRHLPGR IGKQCRERWT NHLRPEIDKA KNIWTEEDDM NLIEAHKVYG  60
NRWSLIARKL EGRSENSVKN HWNATKRSLK AKRRLKKKKN AEAPPGQQWS ILEEYIRSLR  120
PDELAAAPPA PSDDSPPSSY NNVGYGGEVV SPPAAPAPAG GGFDPAAMRL YLSAAAAGSS  180
SSAVNNLAAM NRNPNMAAQP YLGLDLNAYY YGAPLQQQTP PPTPMMMTMM GQDQHQAAAS  240
YSADNLMMTY PFVDHLQAWH SPAPNADAYA ATNANAGPHY SYYSDAGAGP SAAAAAAPAP  300
ANPQDDVDVV QMASREFQLN PSDEEVTLNL AGFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-3218521103B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG189800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791584.11e-124transcription factor CSA-like
TrEMBLA0A3L6TP141e-134A0A3L6TP14_PANMI; Uncharacterized protein
STRINGPavir.J13941.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.19e-33myb domain protein 98