 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.9NG189700.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
LSD |
| Protein Properties |
Length: 176aa MW: 18341.2 Da PI: 8.4401 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9NG189700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 39.5 | 9.5e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+ Crt+L YPrGApsV+Ca+C++V
Pavir.9NG189700.1.p 7 CHACRTVLLYPRGAPSVCCAVCQAV 31
************************9 PP
|
| 2 | zf-LSD1 | 39.9 | 6.7e-13 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggCrtlL+Y+r A VRC++C+tV
Pavir.9NG189700.1.p 46 CGGCRTLLMYTRSADTVRCSCCNTV 70
************************9 PP
|
| 3 | zf-LSD1 | 48 | 2e-15 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+C+t+L+YP+GA sV+Ca+C+++
Pavir.9NG189700.1.p 84 CGHCQTTLMYPYGAHSVKCAICNHI 108
***********************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000303 | Biological Process | response to superoxide |
| GO:0001666 | Biological Process | response to hypoxia |
| GO:0002240 | Biological Process | response to molecule of oomycetes origin |
| GO:0009626 | Biological Process | plant-type hypersensitive response |
| GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway |
| GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway |
| GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process |
| GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process |
| GO:0010618 | Biological Process | aerenchyma formation |
| GO:0043069 | Biological Process | negative regulation of programmed cell death |
| Sequence ? help Back to Top |
| Protein Sequence Length: 176 aa
Download sequence Send
to blast |
MQSQIVCHAC RTVLLYPRGA PSVCCAVCQA VTTVPPPGLE MAQLICGGCR TLLMYTRSAD 60
TVRCSCCNTV NLVRPVNNIA HVNCGHCQTT LMYPYGAHSV KCAICNHITT TGVNTVAPTP 120
SARPASNGSA YSTSSTSVPK SQPQNVTVVV ENPMTVDDKG KLVSNVVVGV TTGKN*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU975049 | 1e-173 | EU975049.1 Zea mays clone 466017 zinc finger protein LSD2 mRNA, complete cds. |
| GenBank | EU976486 | 1e-173 | EU976486.1 Zea mays clone 895962 zinc finger protein LSD2 mRNA, complete cds. |
