PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG181900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 189aa    MW: 21077 Da    PI: 8.9836
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG181900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY234.91.9e-7261624170
                YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                              e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+     l++++h         +e+ kv++ ++++n++++  +s
  Pavir.9NG181900.2.p   6 APPLEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIPSLPVQNH--------SQENFKVHNISFTENYSEYAPTS 87 
                          56679*****************************************************9........8899******************* PP

                YABBY  94 tsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          ++ ++ ++  ++ +++++ +    +r PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl
  Pavir.9NG181900.2.p  88 SKYRMPMMfsTKGDQDHMLH----VRAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 162
                          ***99998744445555555....89***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-709162IPR006780YABBY protein
SuperFamilySSF470952.09E-7106156IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.1E-4108156IPR009071High mobility group box domain
CDDcd000844.35E-4116152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSAQIAPPLE HVCYVHCNFC NTILAVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLIPSLP  60
VQNHSQENFK VHNISFTENY SEYAPTSSKY RMPMMFSTKG DQDHMLHVRA PEKRQRVPSA  120
YNRFIKEEIR RIKASNPAIS HREAFSTAAK NWAHFPNIHF GLGTHESSKN LDEAIGAAGG  180
PQKVQDLY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.59510.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG181900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795820.11e-128protein YABBY 2-like isoform X4
SwissprotQ10FZ71e-109YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A2T7C3E71e-126A0A2T7C3E7_9POAL; Uncharacterized protein
STRINGPavir.Ia01130.1.p1e-133(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-57YABBY family protein