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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.9NG181900.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
YABBY |
Protein Properties |
Length: 192aa MW: 21417.4 Da PI: 8.9836 |
Description |
YABBY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.9NG181900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | YABBY | 238.6 | 1.3e-73 | 6 | 165 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93
e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+ l++++h + ++e+ kv++ ++++n++++ +s
Pavir.9NG181900.1.p 6 APPLEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIPSLPVQNH-----SQLVQENFKVHNISFTENYSEYAPTS 90
56679*****************************************************9.....566999******************** PP
YABBY 94 tsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
++ ++ ++ ++ +++++ + +r PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl
Pavir.9NG181900.1.p 91 SKYRMPMMfsTKGDQDHMLH----VRAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 165
***99998744445555555....89***************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 192 aa
Download sequence Send
to blast |
MSAQIAPPLE HVCYVHCNFC NTILAVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLIPSLP 60 VQNHSQLVQE NFKVHNISFT ENYSEYAPTS SKYRMPMMFS TKGDQDHMLH VRAPEKRQRV 120 PSAYNRFIKE EIRRIKASNP AISHREAFST AAKNWAHFPN IHFGLGTHES SKNLDEAIGA 180 AGGPQKVQDL Y*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |