PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG169700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 678aa    MW: 73215.7 Da    PI: 8.6322
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG169700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.16e-26192245155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          ++r++W +eLH++Fveav q+ G +kA Pk+ile+m+v+gL++e+v+SHLQkYR+
  Pavir.9NG169700.1.p 192 RQRVQWPSELHHKFVEAVYQI-GMDKAAPKKILEVMNVDGLSRENVASHLQKYRI 245
                          58*******************.********************************7 PP
2Response_reg78.52.3e-26121211108
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                          vl vdD+++ +++l++ l++ +y +v++++d+++al++++e++    + l+++D+ mp++dG++ll+ i  e  ++p+i+++a++e e++
  Pavir.9NG169700.1.p  12 VLAVDDDRISLMILEKQLKHCNY-NVTTVTDAKKALDMIRERKdgdqFSLVICDVVMPDIDGFKLLELIGLEM-DMPVIMLSANDETETV 99 
                          799********************.***************9999999***********************6644.8*************** PP

                          HHHHHTTESEEEESS--HHHHH CS
         Response_reg  87 lealkaGakdflsKpfdpeelv 108
                           + ++ Ga d+l+Kp+  e+l+
  Pavir.9NG169700.1.p 100 MKGINHGACDYLVKPVRLEQLR 121
                          *******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.13E-349135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.6E-399135No hitNo description
SMARTSM004482.6E-3010124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.7811128IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2312121IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.51E-2813121No hitNo description
SuperFamilySSF466893.4E-17189249IPR009057Homeodomain-like
PROSITE profilePS5129410.135189248IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-26190250IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-22193245IPR006447Myb domain, plants
PfamPF002491.6E-5194244IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MDAGKFPAGL RVLAVDDDRI SLMILEKQLK HCNYNVTTVT DAKKALDMIR ERKDGDQFSL  60
VICDVVMPDI DGFKLLELIG LEMDMPVIML SANDETETVM KGINHGACDY LVKPVRLEQL  120
RGIWTHVVRN SKTDPRNNII TGNDDADQNL QSLNGDKNEK DGGNRTRKYS KKKKKDVDGA  180
NEDKENTATQ KRQRVQWPSE LHHKFVEAVY QIGMDKAAPK KILEVMNVDG LSRENVASHL  240
QKYRIYLRKL SEGKLKNPNP LVDGPKAWRS NWGPTNSNMN VPESSKLHAE LGTYQSAPSF  300
VGSPRSSNLS ARMNSPSAFG THTLLPTQSV QIMSSQRNLG IPQQDMEPLG QSVNLLKGTV  360
PVPVQDVSRL ISSGNSSGGL SSASPCFSSG PSGSSIVNIS NGVVFNTSKP LSLGISGSSF  420
ANISNDSPPL ATSMPFLSSR SCSSYASILR GKILGASKGI PFEDISDGEM LAPSIHLPLQ  480
SPELVNQPSV QIQSSSADLF NQVAREAHQF AGPCNSSNSC KAAVPSRFPD LSHNVRMPKG  540
PSQGNITKIN QLSRLAASSG HIRTFGNVYQ NQIAGITGKT TPLIGFSEQV APFNFGSNTH  600
HTAMVMGNSD LGSSSTRSAL PNVQIDNSVM PDQMLNGGGT NGNLPQGGTV NQQPVGDQVI  660
NEFLVEQARS RMEQVVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-20190251364ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG169700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812922.10.0two-component response regulator ORR24-like isoform X2
TrEMBLA0A2T7DWI20.0A0A2T7DWI2_9POAL; Two-component response regulator
TrEMBLA0A2T7DWJ50.0A0A2T7DWJ5_9POAL; Two-component response regulator
STRINGPavir.Ia00770.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.16e-81response regulator 12