PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GATA

Protein Properties

Length: 309aa MW: 32794.2 Da PI: 4.477

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG157100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.3	7.9e-17	212	248	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++ Tp +Rrgp g++tLCnaCGl+++ kg+ Pavir.9NG157100.1.p 212 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 248 **********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	1.2E-8	71	106	IPR010399	Tify domain
PROSITE profile	PS51320	14.319	71	106	IPR010399	Tify domain
Pfam	PF06200	3.3E-11	74	105	IPR010399	Tify domain
PROSITE profile	PS51017	12.917	140	182	IPR010402	CCT domain
Pfam	PF06203	3.7E-15	140	180	IPR010402	CCT domain
SMART	SM00401	8.0E-11	206	259	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	6.18E-11	210	256	No hit	No description
Gene3D	G3DSA:3.30.50.10	7.0E-14	211	250	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.05E-15	211	262	No hit	No description
Pfam	PF00320	2.1E-14	212	248	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	212	239	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MPDADVDVEM RAAAAAGASA APGDDDGEDG TGEDEEDGEE VDDEDEDEDE EERTAPAPAE 60 EPPAPAPVSA LPGNPNQLTL LFQGEVYVFE SVTPDKVESV LSLLGRGELP ADYAGKVVPS 120 QNENKGYDDI LRRTDIPAKR VASLLRFHEK RKERNFDKKI RYAVRKEVAL RMQRRKGQFA 180 GRASLEGESP APGCDPGSQS SGLDFVSRES KCQNCGTSEK MTPAMRRGPA GPRTLCNACG 240 LMWANKGTLR SCPKAKVESP VVGIGQVGND NKALVTPKND NTSVSASNGE ATVAAERSAK 300 GAVTVYNT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.27312	0.0	callus\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250\|UniProtKB:Q8LAU9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG157100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By drought and salt stresses. {ECO:0000269\|PubMed:19618278}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793442.1	1e-155	GATA transcription factor 18-like isoform X1
Swissprot	Q10F25	1e-127	GAT18_ORYSJ; GATA transcription factor 18
TrEMBL	A0A3L6TRR5	1e-157	A0A3L6TRR5_PANMI; Uncharacterized protein
STRING	Pavir.J38243.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3460	37	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	2e-63	ZIM-like 1

Link Out ? help Back to Top
Phytozome	Pavir.9NG157100.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]