 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.9NG136000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
LBD |
| Protein Properties |
Length: 192aa MW: 20392.2 Da PI: 9.9465 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9NG136000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 101.9 | 5.8e-32 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89
aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka +e r++a+++l++eA++r rdP +G+++ ++ l+++ +
Pavir.9NG136000.1.p 9 ACAVCKHQRRKCEPNCELAAYFPAHRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRDNAV 98
7**********************************************9977766************************************ PP
DUF260 90 lkaelallkee 100
l+ae +l+++
Pavir.9NG136000.1.p 99 LRAENTALRRQ 109
**999988876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 192 aa
Download sequence Send
to blast |
MTGGGSGGAC AVCKHQRRKC EPNCELAAYF PAHRMNDFRA LHLVFGVANL TKLIKANATE 60
AARRRAAETL TWEARWRERD PSEGCYREVS CLRRDNAVLR AENTALRRQL AEQQQLLLWS 120
RAAAAPSANS NMAGGCYNGN AGGNGLVVAV RPPPHAPAAP AAQTMLAYRG VSVCPATANG 180
RKSAPDAPPS P*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU973222 | 1e-141 | EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds. |
