 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.9NG134200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
CO-like |
| Protein Properties |
Length: 404aa MW: 44117.7 Da PI: 7.2986 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9NG134200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 22.6 | 2.2e-07 | 17 | 60 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
+r C+ + + +++++C ++ +lC+ C + H+ H+v
Pavir.9NG134200.1.p 17 ARSCDGCMRRRARWHCPADDAYLCQACDASVHSAnplarrhHRV 60
678*****************************668888886655 PP
|
| 2 | CCT | 67.2 | 4.4e-23 | 326 | 369 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
Pavir.9NG134200.1.p 326 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRS 369
9*****************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 404 aa
Download sequence Send
to blast |
MTSAGSAAGA ALGARTARSC DGCMRRRARW HCPADDAYLC QACDASVHSA NPLARRHHRV 60
RLPSASCSSP PRDPDAPAWL HGLKRRPRTA RSKPGGSGKH EATPASIAAA VSAAVPDLEA 120
EESGAGIVGD DDDFHGVEDE YEDLLYRVPV FDPMLAELYN PVTDEGEQKP ACLISSLAET 180
SPEFASGSAE ADGLSGFDVP DMELASFAAD MESLFMGVED GFDDLGFLDE EKPQVNVDLG 240
RMNLEATATP APPPELDEKK RKRPEMILKL NYEGVIASWV RDGGSPWFHG ERRPHLDPYD 300
ESWSGFPAGC RGILGGAVTA VTGGEREARV SRYREKRRTR LFAKKIRYEV RKLNAEKRPR 360
MKGRFVKRSS LPSLPRPPPP PQQQKQPPRA MMPHVGAHGR FRF*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 82 | 88 | LKRRPRT |
| 2 | 336 | 352 | RRTRLFAKKIRYEVRKL |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ727843 | 0.0 | KJ727843.1 Zea mays clone pUT5887 C2C2-CO-like transcription factor (COL8) mRNA, partial cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT1G25440.1 | 1e-58 | B-box type zinc finger protein with CCT domain |
