PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG116800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 748aa    MW: 77980.5 Da    PI: 7.0794
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG116800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.6e-095525891954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Pavir.9NG116800.1.p 552 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 589
                          564459******************************88 PP
2BELL120.47.7e-39413483272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          r e+q+kkakL+s+l+eVd+rY++y++q+q+v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia+q+
  Pavir.9NG116800.1.p 413 RFEHQRKKAKLISMLDEVDRRYNHYCDQMQMVVNYFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIASQL 483
                          779******************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-70337481IPR006563POX domain
PfamPF075269.5E-53342480IPR006563POX domain
PROSITE profilePS5007112.6530593IPR001356Homeobox domain
SMARTSM003891.6E-9533597IPR001356Homeobox domain
CDDcd000864.20E-13533594No hitNo description
SuperFamilySSF466892.57E-17535600IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28536599IPR009057Homeodomain-like
PfamPF059203.8E-18550589IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MGIAAPPSQP GQTTTYVSQP TKSSAAISGR PATASSMSHS QGFHQGSSGV FGYPSGGFDR  60
PDSSQDHPQQ HVAQQSRRDK LRVQGFDPAA AAGHGLLPIE GDEHAEPGAM YEHAAAAGAS  120
NMLSEMFNFP APPSGPSATE LLASQMNANY RFGLRQGPGA VAGLSGDGGW FGAGAAGRAG  180
LVLGGANMGS LSLGETSSSK QQGSMAGLAT DPAAAMQLFL MNPQQQQQSR SSPTSPQPSD  240
VQQHHEAFQA FGGAAAAPFG GGGGVVEGQG LSLSLSPSLQ QLEMAKQTEE LRVRDGVLYF  300
NRQQQQGPSA VQQQLPMALH GQVGALGQQL HVGYGPAGVA GVLRNSKYTR AAQELLEEFC  360
SVGRGQIKGG ARGASASNPS AGKGGGGGAS SSGAAQSPSS ASKEPPQLSP ADRFEHQRKK  420
AKLISMLDEV DRRYNHYCDQ MQMVVNYFDS VMGFGAATPY TALAQKAMSR HFRCLKDAIA  480
SQLRHTCELL GEKDAGTSSG LTKGETPRLR AIDQSLRQQR AFHHMGMMEQ EAWRPQRGLP  540
ERSVNILRSW LFEHFLHPYP SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMIEEMYQ  600
QECRELEGSS AGGGGPESGN DPSGADDTHS PTTTGAVAQQ LPQQHGTAVP GMMLHKPDPG  660
TAGPSAADAA FVGIDPVELL GGAAHVGGGA DDLYGRFEPG VRVRYGPGAT GGGGGDVSLT  720
LGLQHAGAGN AGPDGTGRFS LRDYSGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-17539596158Homeobox protein Meis1
4xrs_B2e-17539596158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.170810.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG116800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9575010.0EU957501.1 Zea mays clone 1595427 homeodomain protein JUBEL1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797615.10.0BEL1-like homeodomain protein 4 isoform X2
RefseqXP_025797616.10.0BEL1-like homeodomain protein 4 isoform X2
TrEMBLA0A1E5WM370.0A0A1E5WM37_9POAL; BEL1-like homeodomain protein 4
STRINGMLOC_58467.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44332945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-132BEL1-like homeodomain 4