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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG087500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 31953.3 Da PI: 8.3809 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.3 | 4.3e-14 | 22 | 69 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 +y+ Vr ++ +gr+ AeIrdp + r+r++lg+f++ae+Aa+a+ a+++l Pavir.9NG087500.1.p 22 RYRAVRKRP-WGRFTAEIRDPAK---RARIWLGTFDSAEDAARAYNVAARAL 69 6999*****.**********843...6*******************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.14E-23 | 21 | 69 | No hit | No description |
SuperFamily | SSF54171 | 3.86E-15 | 22 | 70 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-21 | 22 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-22 | 22 | 69 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-8 | 22 | 68 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.072 | 22 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.60.10.10 | 5.2E-8 | 117 | 270 | IPR005135 | Endonuclease/exonuclease/phosphatase |
SuperFamily | SSF56219 | 1.24E-15 | 121 | 270 | IPR005135 | Endonuclease/exonuclease/phosphatase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MTDVNVFGFH LLLSWSAAAA QRYRAVRKRP WGRFTAEIRD PAKRARIWLG TFDSAEDAAR 60 AYNVAARALP TTSPHSPPAL PTPPAANPRP HAAPAPPSSP PAGRFGIAHN SLMSCSNLDS 120 SIVFAPADGT RGGILTAWDP TVFTLSDYFI KPHSLTTCFS CNLSNLDFAI TNTYGPSDHS 180 ASIPFLQCLE ELPALIPGPW ILLGDFNLLR CAADKNNGQF NHSLATAFND AIQDLNVSEI 240 VLSDRLYTWT NLQLNPILAK LDRVFTPRPC LPSSNPLLSP SPHFRSYTLA SKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-16 | 18 | 66 | 1 | 50 | ATERF1 |
3gcc_A | 5e-16 | 18 | 66 | 1 | 50 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG087500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU958014 | 8e-59 | EU958014.1 Zea mays clone 1640422 ethylene-responsive transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Sb09g027366.1 | 3e-58 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53170.1 | 1e-14 | ethylene response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG087500.1.p |