PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG074900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 186aa    MW: 20178 Da    PI: 11.7106
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG074900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1377.5e-1263115153
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                          e++++r+rrk++NR++ArrsR+RK++++eeL+  ++ L ae +aL ++l  l 
  Pavir.9NG074900.1.p  63 EERRRRQRRKESNRLSARRSRERKQQRLEELRGTAARLRAEKQALEERLRALA 115
                          6889******************************************9998885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.3E-861127IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-861115No hitNo description
PfamPF001705.7E-863115IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.18565117IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.16E-767117No hitNo description
PROSITE patternPS0003607085IPR004827Basic-leucine zipper domain
CDDcd147022.21E-1272116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MLSVQEALDL DFAAASSSCG ARDMGMDIIT CGFTPWGPDS CPSLDQDGAA GAGGGGRGGD  60
EEEERRRRQR RKESNRLSAR RSRERKQQRL EELRGTAARL RAEKQALEER LRALARNGVA  120
VCRQNARLRA EAAALARRLR EARRLLALRR IVAGHALSPA RMMPSPLQHQ QAAGVAPLGL  180
ASLMT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16472RRRRQRRKE
27986RRSRERKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG074900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796839.13e-69ocs element-binding factor 1-like
TrEMBLA0A3L6SCA23e-69A0A3L6SCA2_PANMI; Uncharacterized protein
STRINGPavir.Ia00317.1.p2e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138452429