PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG054200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 829aa    MW: 90177.9 Da    PI: 6.0734
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG054200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.21.9e-29593649259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+ k++e prsYY+Ct  gCpvkk vers  d+ ++eitY+g+Hnh+
  Pavir.9NG054200.1.p 593 KDGYSWRKYGQKQLKDAESPRSYYKCTRDGCPVKKVVERSF-DGFITEITYKGRHNHP 649
                          8****************************************.***************8 PP
2WRKY102.32.8e-32724782159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg++ prsYY+Ct  +C+v+k++er+++dp++v +tY+g+Hnh+
  Pavir.9NG054200.1.p 724 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADNCNVRKQIERASTDPRCVLTTYTGRHNHD 782
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF508142.08E-2162157IPR011038Calycin-like
Gene3DG3DSA:2.40.128.201.3E-3267242IPR012674Calycin
PfamPF122048.4E-1770395IPR022017Domain of unknown function DUF3598
SuperFamilySSF508142.08E-21184241IPR011038Calycin-like
Gene3DG3DSA:2.40.128.201.6E-40261400IPR012674Calycin
SuperFamilySSF508142.12E-27261400IPR011038Calycin-like
PROSITE profilePS5081123.169587651IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-26589651IPR003657WRKY domain
SuperFamilySSF1182901.83E-23591651IPR003657WRKY domain
SMARTSM007744.9E-32592650IPR003657WRKY domain
PfamPF031067.6E-23593649IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-33709784IPR003657WRKY domain
SuperFamilySSF1182901.28E-27717784IPR003657WRKY domain
PROSITE profilePS5081135.439719784IPR003657WRKY domain
SMARTSM007741.5E-35724783IPR003657WRKY domain
PfamPF031068.7E-24725782IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MAEALVGLRF AAPAFPQPQR RRRACLLPAA RFAPFWRGRL LTARAAVAGP PEVDEDEAMS  60
IDNLHRFFDL NIGKWDGSFY QFDAHGRVLQ GISTRLSVST YGEGNLISLL QSLYIKQASS  120
AISIVDEDDS EPEWVEYKIK ETNMFTVDKY QQIGFFPEEK AFALRYQTAG MLETVLRVGV  180
LGEDDTGEES PKNLKIPSRK PSIVCENCLY SLEGNGRVRA FHIMDPKGVL DTLLIFHERQ  240
GSAVPQPLIH SPVGTENASR DRINALLGRW EGHSVTKRSG VYGATLAEAD TAVVLKMDSS  300
GQLIQDTLST KVGTGTTTTV NWTGSANNNL LQFDGGYEIT LLPGGMYMGY PSDISKSVAQ  360
LDSFHLEFCW MESPEKRQRL VRTYDSAGLA VSSTYFLETK KQERSTAMDD RRGRGDAMRQ  420
RPFAHAADQG QERVFDGGGG GPAFGSDFDQ RSSSLMALLG AGGVSSSQPP MPAWGVEEVT  480
SAPAINLVPQ SFAMTSYAPP APSYQQPTTF APSPLGGRMD PYPPPYLLAD PPPQWPPPRS  540
TAAAASSSFP PQNFAVLLPR YDQDMQLFGV GSSQQHGLPL PPPPPPAIEQ PAKDGYSWRK  600
YGQKQLKDAE SPRSYYKCTR DGCPVKKVVE RSFDGFITEI TYKGRHNHPR PQERGHAGAG  660
NDALAAAEAA EDMEGPSDDD DDDALLEDDV DGAPDIRGAG GEAGQRVVKK PKIIIQTPSE  720
VDLLDDGYRW RKYGQKVVKG NPRPRSYYKC TADNCNVRKQ IERASTDPRC VLTTYTGRHN  780
HDPPGRGNEA PAAAAAAGGS PAGQPTPPAG GSGSFQQTGG ARQLKEER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yvf_A1e-1535640215358BFA1
5yvf_B1e-1535640215358BFA1
5yvf_C1e-1535640215358BFA1
5yvf_D1e-1535640215358BFA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG054200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9618220.0EU961822.1 Zea mays clone 238426 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690074.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102720317
TrEMBLK4A5N40.0K4A5N4_SETIT; Uncharacterized protein
STRINGSi034188m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.12e-62WRKY DNA-binding protein 58