PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG036500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 187aa MW: 20031.4 Da PI: 9.0764 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0015 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Pavir.9NG036500.1.p 61 FVCKTCSRAFTSFQALGGHRTSH 83 89**********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.49E-5 | 57 | 87 | No hit | No description |
SMART | SM00355 | 0.61 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.7E-10 | 61 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.076 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.0E-4 | 119 | 147 | No hit | No description |
Pfam | PF13912 | 2.9E-8 | 121 | 147 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.3 | 122 | 144 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.224 | 122 | 149 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 124 | 144 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MKHPRDQQHQ EEVSLALSLS TTTTDSSTTS DSSATAPPAA AAKRARRRRG PVVATSGEGD 60 FVCKTCSRAF TSFQALGGHR TSHLRGRHGL ELGVGAKALR QHKAAAGGGD KRRQQQQQHQ 120 THDCHICGLG FELGQALGGH MRRHREEMGA AEAADAWVWR SVARLPEELE VQSAAADPPV 180 LLELFA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG036500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957402 | 2e-46 | EU957402.1 Zea mays clone 1590997 ZFP16-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795976.1 | 3e-87 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A3L6S7X8 | 2e-97 | A0A3L6S7X8_PANMI; Zinc finger protein ZAT12-like | ||||
STRING | Pavir.Ia00292.1.p | 1e-132 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46070.1 | 2e-19 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG036500.1.p |