PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG036400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 148aa MW: 15012.2 Da PI: 10.9927 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00039 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F L H+r+H Pavir.9NG036400.1.p 106 HQCHVCGLGFEMGQALGGHMRRH 128 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.93 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.96 | 46 | 68 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.7E-10 | 46 | 70 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.24E-6 | 46 | 68 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.24E-6 | 101 | 128 | No hit | No description |
SMART | SM00355 | 0.31 | 106 | 128 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.3E-10 | 106 | 131 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.764 | 106 | 133 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MTKHPRDAAA GDVTLSLALS LGGLPAGERG ASKRPRRAAG GGEGEFVCKT CSRAFASFQA 60 LGGHRTSHLR GRHGLALGMP AAAPAAKHQA AAKDPTTKAP APAASHQCHV CGLGFEMGQA 120 LGGHMRRHRE EAAAAAQAPP VLLQLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG036400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086979 | 1e-43 | BT086979.2 Zea mays full-length cDNA clone ZM_BFb0223D14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466195.1 | 3e-55 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A3L6TJ87 | 1e-61 | A0A3L6TJ87_PANMI; Zinc finger protein ZAT8-like | ||||
STRING | Pavir.Ia00291.1.p | 7e-98 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46090.1 | 2e-16 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG036400.1.p |