PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG033700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 649aa    MW: 72920.6 Da    PI: 6.9258
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG033700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.57.3e-1122776472374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++lL++cA+a + +d+++ ++lL+++++++s +g + qRla+yf+++L+arla+s+s++y+++++++t    + + l+a+ l+ +++P++
  Pavir.9NG033700.1.p 277 TTLLIHCAQAAAIDDHRNSNELLKQIRKHSSATGGAGQRLAHYFANGLEARLAGSGSTIYHQIAATRTC---TGDILKAFGLYAKACPFM 363
                          689**********************************************************99998887...899*************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          ++sh  aN+ Il+  ++++r+HiiD++i +G+Q+p L+q +++R +gppslRiTgv+ p++g   +e++e+tg+rL+++A+ ++vpfe++
  Pavir.9NG033700.1.p 364 TISHYFANSNILNVSKSASRLHIIDYGIRYGFQYPVLMQRFSKRCGGPPSLRITGVDFPQPGfrPAERIEATGRRLHEYARMFNVPFEYH 453
                          *************************************************************9**************************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          + ++ +++++++e+L+++++E l+Vn+ +++ +++de+v+ +s+r++vL+++++l+P+++v+   +  +n++ F++rf ea+ ++s+ fd
  Pavir.9NG033700.1.p 454 A-IVGKWDTIQVEDLNINSDELLVVNCLYRMRNIMDETVTDDSPRTRVLNTIRKLNPHLLVHGVINGTYNAPFFVTRFKEAMFFFSSHFD 542
                          *.6999************************************************************************************ PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          +lea+++r +e+r  +Ere++gre+ nv+aceg er+er et+++W++r  +aGF+p+pl+++++k a++ ++k + + + v+e++++++
  Pavir.9NG033700.1.p 543 MLEANASRMDEHRLLIEREYVGREALNVIACEGMERIERPETYKQWHMRNLRAGFRPLPLNKEVMKRARYKVSKSYHRDFLVDEDNKWML 632
                          ****************************************************************************999*********** PP

                 GRAS 360 lgWkdrpLvsvSaWr 374
                          +gWk+r ++++SaW+
  Pavir.9NG033700.1.p 633 QGWKGRVIFALSAWT 647
                          **************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.678250627IPR005202Transcription factor GRAS
PfamPF035142.5E-109277647IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MAMHPGSRNE LDFGDMFSNS NPPTGRMINF SLQQQSQVQF FPSYGLHSHN PPAKPHPSAS  60
PSLVMPGGIT PSPASTTTTE LDNSEDLSET ITDDAVLAYI NQFLLEDEDY ESFPVTSAPV  120
EDSALLAVEK PFIDILKSAK PAQAYEGKSW MTGHCEIPGM GGLDDVVRHT QKSCQSPCEM  180
VKEGSVCAAH KGRKNPHDDG LEMEERKSKQ SALCEEETVR EMFDEVLLCT DENCEFRSPL  240
PVDAQISSGY VKGSGNRRGR RKGRSGAGPE EEAVDLTTLL IHCAQAAAID DHRNSNELLK  300
QIRKHSSATG GAGQRLAHYF ANGLEARLAG SGSTIYHQIA ATRTCTGDIL KAFGLYAKAC  360
PFMTISHYFA NSNILNVSKS ASRLHIIDYG IRYGFQYPVL MQRFSKRCGG PPSLRITGVD  420
FPQPGFRPAE RIEATGRRLH EYARMFNVPF EYHAIVGKWD TIQVEDLNIN SDELLVVNCL  480
YRMRNIMDET VTDDSPRTRV LNTIRKLNPH LLVHGVINGT YNAPFFVTRF KEAMFFFSSH  540
FDMLEANASR MDEHRLLIER EYVGREALNV IACEGMERIE RPETYKQWHM RNLRAGFRPL  600
PLNKEVMKRA RYKVSKSYHR DFLVDEDNKW MLQGWKGRVI FALSAWTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-452806468374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.182641e-176leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG033700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793343.10.0scarecrow-like protein 9
RefseqXP_025793344.10.0scarecrow-like protein 9
RefseqXP_025793345.10.0scarecrow-like protein 9
RefseqXP_025793346.10.0scarecrow-like protein 9
SwissprotQ9XE581e-158SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2S3IGT20.0A0A2S3IGT2_9POAL; Uncharacterized protein
STRINGPavir.Ia00281.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138412529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-159GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]