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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.9NG015000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
WRKY |
Protein Properties |
Length: 381aa MW: 40959.1 Da PI: 6.5037 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.9NG015000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 98.1 | 5.8e-31 | 175 | 233 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
Pavir.9NG015000.1.p 175 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 233
699************************998****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MDMAAAVAGA AAQGDLADVV ARAGAMAAPP STSHRTPPPP SLLAAAADHM SSSAAMARRQ 60 MVPCEEAEPR PVMMLEAPCM VDPYLSSSAT APRGASCWLP PPPLAVQISQ QHTCGYGRDV 120 AMAGAATDVD GEEAMRISPA AHQIIKRKNE VKKVVCIPAL PPTSSRPGGG EVIPSDLWAW 180 RKYGQKPIKG SPYPRGYYRC SSSKGCMARK QVERSRSDPN MLVITYTAEH NHPWPMQRNV 240 LAGYSRPHTH TSTSSCKKKN TCRVDPTISS SSSKNANYYS EHNGVASGNL ELECQQMTTT 300 TDMMEEGINA EAAAAAAGYV AYTIGSLDEE EMMHYHQPIQ TAADEVFAEL EELEPSSSSN 360 PSVNTENIYP RGVSYEWHKF *
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT068753 | 1e-110 | BT068753.1 Zea mays full-length cDNA clone ZM_BFb0381C04 mRNA, complete cds. |
GenBank | EU964815 | 1e-110 | EU964815.1 Zea mays clone 281745 WRKY transcription factor 14 mRNA, complete cds. |
GenBank | KJ727613 | 1e-110 | KJ727613.1 Zea mays clone pUT5524 WRKY transcription factor (WRKY10) mRNA, partial cds. |