PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WRKY

Protein Properties

Length: 381aa MW: 40959.1 Da PI: 6.5037

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG015000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.8e-31	175	233	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+ Pavir.9NG015000.1.p 175 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 233 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	33.247	169	235	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.0E-30	172	235	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	173	235	IPR003657	WRKY domain
SMART	SM00774	4.3E-38	174	234	IPR003657	WRKY domain
Pfam	PF03106	8.4E-26	176	233	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MDMAAAVAGA AAQGDLADVV ARAGAMAAPP STSHRTPPPP SLLAAAADHM SSSAAMARRQ 60 MVPCEEAEPR PVMMLEAPCM VDPYLSSSAT APRGASCWLP PPPLAVQISQ QHTCGYGRDV 120 AMAGAATDVD GEEAMRISPA AHQIIKRKNE VKKVVCIPAL PPTSSRPGGG EVIPSDLWAW 180 RKYGQKPIKG SPYPRGYYRC SSSKGCMARK QVERSRSDPN MLVITYTAEH NHPWPMQRNV 240 LAGYSRPHTH TSTSSCKKKN TCRVDPTISS SSSKNANYYS EHNGVASGNL ELECQQMTTT 300 TDMMEEGINA EAAAAAAGYV AYTIGSLDEE EMMHYHQPIQ TAADEVFAEL EELEPSSSSN 360 PSVNTENIYP RGVSYEWHKF *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MDMAAAVAGA AAQGDLADVV ARAGAMAAPP STSHRTPPPP SLLAAAADHM SSSAAMARRQ  60
MVPCEEAEPR PVMMLEAPCM VDPYLSSSAT APRGASCWLP PPPLAVQISQ QHTCGYGRDV  120
AMAGAATDVD GEEAMRISPA AHQIIKRKNE VKKVVCIPAL PPTSSRPGGG EVIPSDLWAW  180
RKYGQKPIKG SPYPRGYYRC SSSKGCMARK QVERSRSDPN MLVITYTAEH NHPWPMQRNV  240
LAGYSRPHTH TSTSSCKKKN TCRVDPTISS SSSKNANYYS EHNGVASGNL ELECQQMTTT  300
TDMMEEGINA EAAAAAAGYV AYTIGSLDEE EMMHYHQPIQ TAADEVFAEL EELEPSSSSN  360
PSVNTENIYP RGVSYEWHKF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-24	148	235	2	79	Disease resistance protein RRS1
5w3x_D	1e-24	148	235	2	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG015000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT068753	1e-110	BT068753.1 Zea mays full-length cDNA clone ZM_BFb0381C04 mRNA, complete cds.
GenBank	EU964815	1e-110	EU964815.1 Zea mays clone 281745 WRKY transcription factor 14 mRNA, complete cds.
GenBank	KJ727613	1e-110	KJ727613.1 Zea mays clone pUT5524 WRKY transcription factor (WRKY10) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980994.1	1e-163	probable WRKY transcription factor 14
Swissprot	Q9SA80	6e-52	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A3L6SG53	0.0	A0A3L6SG53_PANMI; Putative WRKY transcription factor 14
STRING	Pavir.Ia00085.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13466	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	8e-53	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Pavir.9NG015000.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]