PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG015000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 381aa    MW: 40959.1 Da    PI: 6.5037
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG015000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31175233259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  Pavir.9NG015000.1.p 175 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 233
                          699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.247169235IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-30172235IPR003657WRKY domain
SuperFamilySSF1182901.7E-26173235IPR003657WRKY domain
SMARTSM007744.3E-38174234IPR003657WRKY domain
PfamPF031068.4E-26176233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDMAAAVAGA AAQGDLADVV ARAGAMAAPP STSHRTPPPP SLLAAAADHM SSSAAMARRQ  60
MVPCEEAEPR PVMMLEAPCM VDPYLSSSAT APRGASCWLP PPPLAVQISQ QHTCGYGRDV  120
AMAGAATDVD GEEAMRISPA AHQIIKRKNE VKKVVCIPAL PPTSSRPGGG EVIPSDLWAW  180
RKYGQKPIKG SPYPRGYYRC SSSKGCMARK QVERSRSDPN MLVITYTAEH NHPWPMQRNV  240
LAGYSRPHTH TSTSSCKKKN TCRVDPTISS SSSKNANYYS EHNGVASGNL ELECQQMTTT  300
TDMMEEGINA EAAAAAAGYV AYTIGSLDEE EMMHYHQPIQ TAADEVFAEL EELEPSSSSN  360
PSVNTENIYP RGVSYEWHKF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-24148235279Disease resistance protein RRS1
5w3x_D1e-24148235279Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG015000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0687531e-110BT068753.1 Zea mays full-length cDNA clone ZM_BFb0381C04 mRNA, complete cds.
GenBankEU9648151e-110EU964815.1 Zea mays clone 281745 WRKY transcription factor 14 mRNA, complete cds.
GenBankKJ7276131e-110KJ727613.1 Zea mays clone pUT5524 WRKY transcription factor (WRKY10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980994.11e-163probable WRKY transcription factor 14
SwissprotQ9SA806e-52WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A3L6SG530.0A0A3L6SG53_PANMI; Putative WRKY transcription factor 14
STRINGPavir.Ia00085.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.18e-53WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]