PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG652100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 320aa    MW: 34656.3 Da    PI: 6.2523
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG652100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.5e-18100149255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +++G+r+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a++  +++l+g
  Pavir.9KG652100.1.p 100 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTAEDAARAYDVEARRLRG 149
                          69*******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.2E-3299157IPR001471AP2/ERF domain
PfamPF008473.1E-11100149IPR001471AP2/ERF domain
CDDcd000188.28E-29100159No hitNo description
SMARTSM003801.9E-35100163IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21100158IPR016177DNA-binding domain
PROSITE profilePS5103223.42100157IPR001471AP2/ERF domain
PRINTSPR003672.6E-11101112IPR001471AP2/ERF domain
PRINTSPR003672.6E-11123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MCGGAILAEL IPSPRRAASK PVTAGHLWPA GSDTKKAGSG RSKRHQLADV DDFEAAFEDF  60
ADDFDKEEVE DHHFVFSSKS AFSPAHGVRA ATQKRRGRRH FRGIRQRPWG KWAAEIRDPH  120
KGTRVWLGTF NTAEDAARAY DVEARRLRGS KAKVNFPAAG ARPRRGNSPR PQRHHAAAQP  180
ALLAGEKRKE EEIVVKPEIG ASFDFDVGSF FDTAFPAAPP AMENSFAGST GSESGSPAKK  240
MRYDNDSSSD GMSSGGGSAL ELADELAFDP FMLLQMPYSG GYESLDGLFA VDAAQDVNND  300
MNGVSLWSFD EFPDDSAVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2299157463ATERF1
3gcc_A3e-2299157463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298QKRRGRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.2160.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG652100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791485.11e-174ethylene-responsive transcription factor 1-like
RefseqXP_025791486.11e-174ethylene-responsive transcription factor 1-like
TrEMBLA0A2T7CGP21e-174A0A2T7CGP2_9POAL; Uncharacterized protein
STRINGPavir.Ib00526.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.33e-26ERF family protein