PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG647000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 383aa    MW: 41547.4 Da    PI: 6.5061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG647000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-14109160155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++ + + a+i+  A++Y+++L+
  Pavir.9KG647000.1.p 109 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 160
                          79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-13107163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-14107164No hitNo description
PROSITE profilePS5088815.904108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-17108175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-10114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MALEAVVFSP AGHFGYGRGD SPYALPWCDM GDLGAGDYSW DQELDAWAAP AVWDDDWGEA  60
ASARDHSSDA SSDRQQQGKE AAPEPPAPAV RRKRRRTKVA KNKEEMETQR MTHIAVERNR  120
RRQMNEYLAV LRSLMPPSYA HRGDQASIVG GAINYVRELE HLLQSLEVQK SIRNRRGGST  180
DAGGSSSPFA GFFSFPQYST SPAHHGCSSS TSNTSNNAAS SGDVSAESGR PAAVADIEVT  240
MVEGHASLKV LARRRPKQLL KLVAGLHQLR IPPLHLNMTT VDAMVLYTFS LKVEDDSKMG  300
SVEDIATAVH EILGSIQQQE EETAAMGNPA QHLHLSACPL HTALAVPSCQ WNPVACTACD  360
RDCTLGRHLM SHTGSKDTCQ EF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19195RKRRR
29196RKRRRT
3109120RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG647000.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2034681e-112KT203468.1 Paspalum vaginatum clone Sp11 hypothetical protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796362.11e-178transcription factor bHLH94-like
SwissprotQ9C7T46e-76BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A3L6TQL10.0A0A3L6TQL1_PANMI; Transcription factor bHLH94-like
STRINGPavir.J40759.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]