 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.9KG646700.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 323aa MW: 35097.4 Da PI: 4.6131 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9KG646700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.5 | 1.3e-19 | 69 | 121 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++ +q+++Le++Fe +++++ +++ ++A+ lgL+ rqV vWFqNrRa++k
Pavir.9KG646700.1.p 69 KRRLAVDQVRALERCFETDNKLDPDRKSRIARDLGLQPRQVAVWFQNRRARWK 121
4578899*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 125.6 | 2.2e-40 | 67 | 159 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
ekkrrl+ +qv++LE++Fe+++kL+p+rK+++ar+LglqprqvavWFqnrRAR+ktk lE+d++aL+++++al+++ ++L++++++L++e
Pavir.9KG646700.1.p 67 EKKRRLAVDQVRALERCFETDNKLDPDRKSRIARDLGLQPRQVAVWFQNRRARWKTKTLERDFAALRARHEALRADCDALRRDKDALAAE 156
69**************************************************************************************99 PP
HD-ZIP_I/II 91 lke 93
++e
Pavir.9KG646700.1.p 157 IRE 159
986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 323 aa
Download sequence Send
to blast |
MKRQSKRPAS SHESTEEGEK LAFAEDEALA ARNMEHEEAE PELDDADDDE DELASGRAGR 60
SPGGLGEKKR RLAVDQVRAL ERCFETDNKL DPDRKSRIAR DLGLQPRQVA VWFQNRRARW 120
KTKTLERDFA ALRARHEALR ADCDALRRDK DALAAEIREL RQKLSKPEAA AKLEAAANDA 180
AAEERQATAG ASAAAVCKDG SSDSDSSVVF NDVEASPYSG AAFEQPAFAG FGAPFLDTSA 240
AVTTGCSSLS MFETKWQQAP ACPYDSYKSS GGVYGFTEEW FASSDVIGSG DCAASFFSEE 300
HASSLNFGWC ASSTEAWERA RL*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX469925 | 0.0 | JX469925.1 Zea mays subsp. mays clone UT3181 HB-type transcription factor mRNA, partial cds. |
