PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG645000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1032aa    MW: 115066 Da    PI: 5.7062
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG645000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.47.6e-55191362118
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          lke ++rwl++ ei++iL+n+++++++ e+++rp+sg l+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+ee
  Pavir.9KG645000.1.p  19 LKEaQHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGLLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEE 108
                          45559************************************************************************************* PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylevk 118
                          n++fqrr+yw+Lee++ +ivlvhylevk
  Pavir.9KG645000.1.p 109 NENFQRRSYWMLEEDFMHIVLVHYLEVK 136
                          *************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.26715141IPR005559CG-1 DNA-binding domain
SMARTSM010769.8E-7618136IPR005559CG-1 DNA-binding domain
PfamPF038591.0E-4821135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.9E-8441527IPR013783Immunoglobulin-like fold
PfamPF018332.2E-10442522IPR002909IPT domain
CDDcd001029.97E-5442529No hitNo description
SuperFamilySSF812961.31E-18443528IPR014756Immunoglobulin E-set
CDDcd002041.23E-12623735No hitNo description
SuperFamilySSF484036.84E-16634737IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.1E-16637738IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.998643737IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.576643675IPR002110Ankyrin repeat
PROSITE profilePS500888.736676708IPR002110Ankyrin repeat
SuperFamilySSF525403.98E-8847900IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.075849871IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407850879IPR000048IQ motif, EF-hand binding site
PfamPF006120.0034851870IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022872894IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578873897IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4875894IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1032 aa     Download sequence    Send to blast
MAEARRYAIA PQLDVDQILK EAQHRWLRPA EICEILKNYR NFRIAPEPPN RPPSGLLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENE NFQRRSYWML  120
EEDFMHIVLV HYLEVKGGKS TSCIRGHDDM LQAARTDSPL SQLPSQTTEG ESSVSGQATE  180
YEETESDIYS GGAGYHPFSW TQQHENGAGP VMGASILSSY IPALIVGNHQ GFPATATTTD  240
LYSHGQDALP VALNEPALGI ALNGADNQLD PSSLNGLPDQ GVHQMPPPLI TDPSKRFPFF  300
EGPGIESFTF DEVYNGLGIK DADTVDTDEG SLWKLPGAIS SFPTEDSFQQ NGRSLVETIN  360
YPLLKTQSSG LSDILKDTFK KSDSFTRWMS KELGEVDDSQ IRSSSGVYWN SEETDNIIEA  420
SSCDQLDQFT VDPVLAQDQL FSISDFSPSW TYAGSKTRVL ITGRFLNSDE VQRWKWSCMF  480
GEVEVPAEIS ADGTLRCYSP SHKPGRVPFY VTCSNRLACS EIREFEFRPS NSKHMDVRSP  540
HDDAKKTYLQ MRLDDLLSLG QDEYQAIVSN PTKEIIDLSK KISSLMTDND SWSELLKLAC  600
DNELATDDKQ DQFFENRLKE KLHIWLVHKA GDGGKGPSVL DEEGQGVLHL AATLGYDWAI  660
RPTISAGVSI NFRDAHGWTA LHWAAFCGRE RTVVALIALG AAPGALTDPT PDFPTGSTPA  720
DLASANGYKG ISGFLAESAL ISHLQTLDLK ETMGSNASEI SSLPGIGDVI ERRASPLAGE  780
GLLAGSMGDS LGAVRNAAQA AARIYQVFRM QSFQRKQAVQ YEDENGAISD NRALSLLSVK  840
PSKPGQLDPL HAAATRIQNK FRGWKGRKEF LLIRQRIVKI QAHVRGHQVR KHYRKIIWSV  900
GIVEKVILRW RRKGAGLRGF RPTEGAVEGT SSSHNDLIQN KPAQEDYDFL QQGRKQTEER  960
LQKALARVKS MVQYPDARDQ YQRILTVVTR LQESQALQEK MLESSTDMDE GFVMSEFQEL  1020
WDDDMPTPGN T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.166820.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG645000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793890.10.0calmodulin-binding transcription activator 3-like isoform X2
TrEMBLA0A2S3ITE50.0A0A2S3ITE5_9POAL; Uncharacterized protein
STRINGPavir.Ib00572.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains