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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG628200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 88aa MW: 10145.1 Da PI: 9.9052 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.1 | 1.1e-15 | 22 | 80 | 42 | 99 |
TS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 42 sgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 g+sWev++ ++++g+ + +GWk+Fv++n+L+ gD ++F+l ++++ +++v v+r+ Pavir.9KG628200.1.p 22 CGKSWEVRCVLkKGNPGTKRFLQGWKQFVRDNKLQMGDLCLFELLENMKHTMKVYVIRA 80 59*******77777777766667**********************99***9****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.592 | 1 | 81 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.83E-18 | 1 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.31E-14 | 1 | 79 | No hit | No description |
SMART | SM01019 | 0.0086 | 2 | 81 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-18 | 2 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-13 | 22 | 80 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MPRVYADVYL PFVDQTLMLQ CCGKSWEVRC VLKKGNPGTK RFLQGWKQFV RDNKLQMGDL 60 CLFELLENMK HTMKVYVIRA KSILASS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG628200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304713.1 | 9e-38 | uncharacterized protein LOC8062495 isoform X1 | ||||
Swissprot | Q851V1 | 7e-25 | Y3160_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A1B6QJB4 | 4e-40 | A0A1B6QJB4_SORBI; Uncharacterized protein | ||||
STRING | Pavir.J20850.1.p | 2e-58 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG628200.1.p |