PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG622300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 198aa    MW: 22125.5 Da    PI: 8.7686
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG622300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY51.15.3e-16148146
                YABBY  1 advfssseqvCyvqCnfCntila..vsvPstslfkvvtvrCGhCtsll 46
                         +d++s+se++Cyv+C++Cnt+la  v vP + l+ +vtv+CGhC +l 
  Pavir.9KG622300.1.p  1 MDLVSQSEHLCYVRCTYCNTVLAlqVGVPCKRLMDTVTVKCGHCNNLS 48
                         57899****************9744778*****************984 PP
2YABBY94.13.5e-298214995162
                YABBY  95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                          ++++   s  ++e +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa 
  Pavir.9KG622300.1.p  82 NQPMPLASPTSTEASPRMPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 149
                          44555557889999*****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.0E-446150IPR006780YABBY protein
SuperFamilySSF470951.57E-892151IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.9E-5104151IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDLVSQSEHL CYVRCTYCNT VLALQVGVPC KRLMDTVTVK CGHCNNLSYL SPRPPMVQPL  60
SPTDHPLGPF QCQGPCNDCR RNQPMPLASP TSTEASPRMP FVVKPPEKKH RLPSAYNRFM  120
REEIQRIKAA KPDIPHREAF SMAAKNWAKC DPRCSTTVST ATSNSAPESR VVPAPQERAK  180
EQVIESFDIF KQIERSI*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected during flower and leaf development. Expression in the flower meristem in the early stage of flower development. When carpel primordia begin to form, specific and uniform expression in carpel primordia. Expression in the central region of the leaf plastochron 1 (P1) primordia. Detected up to P4 stage, hardly detected in the P5 leaves. {ECO:0000269|PubMed:14729915}.
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG622300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4702680.0AB470268.1 Sorghum bicolor SbDL mRNA for DL related protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797472.11e-142protein DROOPING LEAF isoform X1
SwissprotQ76EJ01e-115YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A2T7CFS91e-141A0A2T7CFS9_9POAL; Uncharacterized protein
TrEMBLA0A2T8I5V11e-141A0A2T8I5V1_9POAL; Uncharacterized protein
STRINGPavir.Ia04690.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.14e-50YABBY family protein