PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG607600.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 322aa MW: 34699.1 Da PI: 8.8706

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG607600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	105.7	2.5e-33	1	49	14	62
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s Pavir.9KG607600.2.p 1 MDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 49 69*******************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	24.39	1	47	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.2E-26	1	47	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-17	1	38	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MDTKFCYYNN YNINQPRHFC KNCQRYWTAG GAMRNVPVGA GRRKSKSASA ASHFLQRVRA 60 ALPIDPLCTA AKTNGTVLSF GSDMPSLDLS EQMKHLKEKL VPITRIKSSD DRSVGSCTEG 120 SAKGEDSNQM NQKEKVTADK SENVVQHPCM NGVTMWPFSC APPPACYTSG IAIPFYPAAA 180 AYWGCMVPGA WNAPWPPHSQ SESASSLSTA SPASTKSNCL TPGKRSRDSD EEGDTKGNGK 240 VWVPKTIRID DADEVARSSI LSLIGINGDK VGKDGRGCKL ARVFEQKEEA KTATHTVINS 300 LPFLQGNPAA LSRSLTFQEG S*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.3491	0.0	callus\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG607600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC169375	0.0	AC169375.4 Sorghum bicolor clone SB_BBc0020O07, complete sequence.
GenBank	HQ540086	0.0	HQ540086.1 Sorghum bicolor clone SbDof23 Dof-type zinc finger protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796665.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A2S3ITV1	0.0	A0A2S3ITV1_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CH05	0.0	A0A2T7CH05_9POAL; Uncharacterized protein
STRING	Pavir.Ib00446.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	8e-37	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Pavir.9KG607600.2.p