PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG592000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 1491aa    MW: 164898 Da    PI: 6.3174
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG592000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0009913801405123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                           ++C    C++ F ++ +L+ H r+ +
  Pavir.9KG592000.1.p 1380 FQCDidLCDMAFETRAELNAHKRNiC 1405
                           899999****************9877 PP
2zf-C2H211.60.0008814051427323
                           ET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                           C+   Cgk+F+++ +LkrH+ +H
  Pavir.9KG592000.1.p 1405 CTdeSCGKRFRSHKYLKRHQCVH 1427
                           77778***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.1E-111253IPR003349JmjN domain
PROSITE profilePS5118313.4951354IPR003349JmjN domain
PfamPF023754.3E-131447IPR003349JmjN domain
PROSITE profilePS5118434.798207376IPR003347JmjC domain
SMARTSM005581.6E-47207376IPR003347JmjC domain
SuperFamilySSF511975.49E-27213372No hitNo description
PfamPF023732.0E-36240359IPR003347JmjC domain
SMARTSM003554813801402IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0314031432IPR007087Zinc finger, C2H2
SMARTSM003552.914031427IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014051427IPR007087Zinc finger, C2H2
SuperFamilySSF576672.66E-514051440No hitNo description
Gene3DG3DSA:3.30.160.601.5E-414091433IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.21914331462IPR007087Zinc finger, C2H2
SMARTSM003550.002914331457IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.7E-914341457IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014351457IPR007087Zinc finger, C2H2
SuperFamilySSF576678.48E-1014431485No hitNo description
Gene3DG3DSA:3.30.160.608.0E-1014581485IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.7914631489IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15714631490IPR007087Zinc finger, C2H2
PROSITE patternPS00028014651489IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1491 aa     Download sequence    Send to blast
MSPPAWLRGL PRAPEYRPTE SEFADPIAFL SRVEREAAAY GICKVIPPYR RPSRRFVFAH  60
LNRYLTSSFD AANPAVPGSS SSTAPSRPES AAVFTTRHQE LGTPRRGRPP PQVLKQVWQS  120
GEQYTLEQFE AKSRAFSKVH LAGLREPTPL EVESLFWKAS ADRPIYIEYA NDVPGSGFAA  180
PPQSRRRKKR RRDGDQVEEG EKGSGWRLSG SPWNLQAIAR APGSLTRFMP DDVPGVTSPM  240
VYIGMLFSWF AWHVEDHELH SLNFLHTGAP KTWYAVPGDR ASELEEVIRV HGYGGNPDRL  300
ASLAVLGEKT TLMSPDVLVA RGVPCCRLVQ YPGEFVVTFP RAYHIGFSHG FNCGEAANFA  360
TPQWLKFAKE AAVRRAVMNY LPMLSHQQLL YLLAASFIIK TPNVLSGIRT SRLRDRRKEE  420
RELLVKQEFL QDMINENKLL CSFLKKKSIE NVVLWEPDLL PSSTVLNSCS FGSKASEKKS  480
EDGCRFESSQ CNHKDNSPSD GSALMTGTQT KCMSASNKSS DAASASVEKS DADTDDEDDL  540
PFDLSIDSGS LTCVACGILG YPFMAILQPS REALEGISPV NMERCKLSSE KEKSANVLPC  600
CPDSNFGSSF VPDRPSCSVE QPCLATPAKQ ANINHRNAKS YEDVCLPENE HAGPVQQHSD  660
SSYYCRSENT LHSCSNREKS DNTIPKDSLG PKVKQTGRCD INIQAVESCD GTINWNTSST  720
FARPRIFCLQ HALEIEELFE GKGGVHALII CHSDYTKLKA LAISIAEEIE FQFDCTDVPL  780
ADASKSDLHL INISIDDEGH EEDGRDWTSQ MGLNLKYCAK LRKETSGIQD QSPLSVWGLF  840
SNPSPVSVVP NLKWLCRKAR TPYRVIGIIS SSSTSAIAGE VKPEVKQEIG TTGNVCEDDN  900
SQHIFQQNGL LQPSRLHNSN DRDNRPSCSK EIDHDGHSLI DIPIAVAEYP LKHQVCEGPI  960
SVSTRNDTIC SSDSQDSSPL ATSPVDVTRY QGCTQSTELS SSSTFYIQQF LNDESTSVEG  1020
SMNCISNHEY LEPQDVTLQC RDECLQVQQD QEEMGLCNNP HRTSADPGLK EDLAISEEKH  1080
GGTVSSALEN DEGSVKTSNC SDKTKESATA NQLQNHDVGA VPVKQKSSFD EMTCSADVQC  1140
ITFGCVGSAD VPVLTQPPSV LHDLMSDELQ VDSHHCVVKA IEPESNNSAK HGSLQIDNLI  1200
LEDTHATSTT GIPVHDGESL HAGSNSFDIL LGALAEESKG TDAPGKDEVG KASLTLMTLA  1260
SNDHFADEIA EGKIVEVVET DTTFRATKDN QQVDRPHDFC LSDLVSRSIG NSNRTDIICY  1320
VRRKRKRKKD SQSNTDSSPS LGSFIRSPCE SLRRRTKPSV VETVEVSAGK KGKRAKVGSF  1380
QCDIDLCDMA FETRAELNAH KRNICTDESC GKRFRSHKYL KRHQCVHSEI RPLKCPWDGC  1440
KMTFKWLWAQ TEHVRVHTGE RPYKCSAPSC GQTFRYVSDY SRHRKKFNHY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-7364128376Transcription factor jumonji (Jmj) family protein
6ip4_A2e-7364128376Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189RRRKKR
213211326RRKRKR
313211327RRKRKRK
413221327RKRKRK
513221328RKRKRKK
613221329RKRKRKKD
713241328RKRKK
813241329RKRKKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.205670.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG592000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793314.10.0lysine-specific demethylase SE14
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A3L6SH780.0A0A3L6SH78_PANMI; Lysine-specific demethylase SE14-like
STRINGPavir.Ib00293.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-170C2H2 family protein