PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG585300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 255aa    MW: 26745.4 Da    PI: 9.1407
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG585300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.92.8e-18157190134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++C + +Tp+WR+gp g++tLCnaCG+++++ +
  Pavir.9KG585300.1.p 157 CTHCASEETPQWRQGPAGPSTLCNACGVRFKSGR 190
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.018151187IPR000679Zinc finger, GATA-type
SMARTSM004013.4E-14151201IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-14154215No hitNo description
Gene3DG3DSA:3.30.50.104.1E-14155188IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.08E-14156205No hitNo description
PROSITE patternPS003440157182IPR000679Zinc finger, GATA-type
PfamPF003205.0E-16157190IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MIKGHRIISN KKISFLYLCA VTAAATMAGL EAEEENPAAA AAELAGGADA SLNAFFDHAG  60
LELAAGGGGQ GAEEEEELEW LSNMDAFPSV ETMAAEVEAA PSRPSAGLGC LEALPHVVGP  120
RTKGLRRRRR VTAPWSVPPV LPPAPPPAGG AAPRRRCTHC ASEETPQWRQ GPAGPSTLCN  180
ACGVRFKSGR LFPEYRPMNS PTFSPLLHSN SHRRVLEMRR HVEEEAAAGG GRAGARARRA  240
KRAAARAAAV PHGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG585300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0184181e-118BT018418.1 Zea mays clone EL01N0356F04.d mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004987179.13e-91GATA transcription factor 7
TrEMBLA0A368SVW08e-90A0A368SVW0_SETIT; Uncharacterized protein
STRINGPavir.J23680.1.p2e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59623656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.26e-34GATA transcription factor 11