PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG576100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 245aa    MW: 28050.5 Da    PI: 7.283
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG576100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+ Ed ll ++v+q+G g+W+++a+  g++R++k+c++rw +yl
  Pavir.9KG576100.1.p 15 KGPWTALEDRLLTEYVQQHGEGSWNSVAELTGLRRSGKSCRLRWVNYL 62
                         79********************************************97 PP
2Myb_DNA-binding53.17.2e-1768112147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+ T++E+  +++++++lG++ W++Iar+++ gRt++++k++w+++
  Pavir.9KG576100.1.p  68 RGKITPDEETVILQLHAMLGNR-WSAIARCLP-GRTDNEIKNYWRTH 112
                          8999******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6241062IPR017930Myb domain
SuperFamilySSF466891.83E-3012109IPR009057Homeodomain-like
SMARTSM007178.6E-151464IPR001005SANT/Myb domain
PfamPF002491.2E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-231669IPR009057Homeodomain-like
CDDcd001673.58E-111762No hitNo description
PROSITE profilePS5129423.40363117IPR017930Myb domain
SMARTSM007179.9E-1667115IPR001005SANT/Myb domain
PfamPF002499.0E-1568112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2470115IPR009057Homeodomain-like
CDDcd001672.03E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDAISSLMLQ EGWRKGPWTA LEDRLLTEYV QQHGEGSWNS VAELTGLRRS GKSCRLRWVN  60
YLRPDLKRGK ITPDEETVIL QLHAMLGNRW SAIARCLPGR TDNEIKNYWR THFKKARPSR  120
RARAQLLHQY QLQQQEQRRQ YLQSLHLLHQ HQQQQLQLLQ QQSQQLMMTQ QQSPPEPDHQ  180
AAVMAMVSND DQQGSPASTA EHCTLPVPDD DDALLWDSLW KLVDGDGCAD GSSGGEYYTA  240
RTPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261511527126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG576100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9604500.0EU960450.1 Zea mays clone 224989 MYB305 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985745.11e-112transcription factor MYB2
TrEMBLA0A3L6TI211e-111A0A3L6TI21_PANMI; Protein ODORANT1-like
TrEMBLK4AEH41e-111K4AEH4_SETIT; Uncharacterized protein
STRINGPavir.Ib00221.1.p1e-180(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132282433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-62myb domain protein 305