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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.9KG555000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
C3H |
Protein Properties |
Length: 412aa MW: 43822.9 Da PI: 8.1247 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.9KG555000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 32.3 | 1.7e-10 | 342 | 366 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
ktelC+ + r G C+y +rC+FaHg+
Pavir.9KG555000.1.p 342 KTELCNKWER-GACPYDGRCRFAHGM 366
9*********.*************95 PP
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2 | zf-CCCH | 19.5 | 1.8e-06 | 378 | 403 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt C+ fa+ C+yG rC+F H+
Pavir.9KG555000.1.p 378 YKTLACQLFAAASGCPYGHRCHFRHS 403
99*********************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 412 aa
Download sequence Send
to blast |
MEGELGFLSP ARPSRVSSER GDGRGFGSPT WSSPLGTLLE SPSSRVSEGR ACEDGVSGFS 60 SPTWGSPLLN LFNTPSSGVS DDSPVGGNGF GFNSPTWGSP LERLFNSPSS CVSDSRGGGN 120 GSGSGISTPK QASPLGMLFN SPSSCFSDSR SGGNGSGSVF STPKHAPPLE TLLNSPSSCV 180 SDSRGGGNSS SLRVSKELDS EVQKAERLLR AITERYNNCF LRLRNATAEL ADLRRERIRL 240 GAENLHLSLL LEEHVVAEQS NQASAVPLTP PLKPVQAEAA SGCAPKSISI RSKSFISPKQ 300 PLREIQPQRL RVRASPAKED TGGKEKDDGE VELEAYGQGA LKTELCNKWE RGACPYDGRC 360 RFAHGMEELR PVIRHPRYKT LACQLFAAAS GCPYGHRCHF RHSLPSIAES C*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC118668 | 9e-78 | AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence. |
GenBank | AC137267 | 9e-78 | AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence. |
GenBank | AP014959 | 9e-78 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
GenBank | CP012611 | 9e-78 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |