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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.9KG529500.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 322aa MW: 35316.8 Da PI: 10.5434 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9KG529500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 74.4 | 4.7e-23 | 1 | 235 | 1 | 193 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki...................rernlalsekkaavaerd............ 57
mdddgs rn+g+ye k +lglqlmss++ +rd+k+ +++++ +++++++++r
Pavir.9KG529500.1.p 1 MDDDGSLGiRNWGFYETV---KGDLGLQLMSSVPpDRDTKPllpngcnflqhhghhnaqhQHQHQHQHHPQHSHHPRSgggggssgapgg 87
9*****999******988...9***********99***************9877655554333333444455555555************ PP
GAGA_bind 58 .........maflqrdkalae...rnkalverdnkllalllvenslasalpvgvq.vl.sgtksidslqqlsepqledsavelreeekle 133
m+f++++++l+ ++++ ++r++k+l+ l+v +p + v+ ++ + ++ + p +++ + ++ee +
Pavir.9KG529500.1.p 88 mpteppavhMDFARNEAWLHPsqhHHQHQHPRQQKVLHHLPVGPVGHVGHPGHGGhVVhHHPSGYGMMADAHGPPQQPQDPPPTKEESMP 177
********************9444456678899999999999887765444433303303334455555544444444444446777799 PP
GAGA_bind 134 alpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekks 193
++pie+ +++ k+++ +kkrq++++pk++k kk+kk ++++++ ++++ +r + ++k+
Pavir.9KG529500.1.p 178 QPPIED-HPVLKNEPPVKKRQQGRQPKSPKPKKPKK-VAAPQENGAPNKPAPRPRGPRKT 235
999998.667777778888*****************.56777777777766888888876 PP
|
| 2 | GAGA_bind | 198.1 | 1e-60 | 238 | 321 | 218 | 301 |
GAGA_bind 218 alrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
a++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+lsnp+DLk++WAkHGtnkfv ir
Pavir.9KG529500.1.p 238 APQQCYRWGAGGWQSACCTTSISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLSNPIDLKTFWAKHGTNKFVVIR 321
69********************************************************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MDDDGSLGIR NWGFYETVKG DLGLQLMSSV PPDRDTKPLL PNGCNFLQHH GHHNAQHQHQ 60
HQHQHHPQHS HHPRSGGGGG SSGAPGGMPT EPPAVHMDFA RNEAWLHPSQ HHHQHQHPRQ 120
QKVLHHLPVG PVGHVGHPGH GGHVVHHHPS GYGMMADAHG PPQQPQDPPP TKEESMPQPP 180
IEDHPVLKNE PPVKKRQQGR QPKSPKPKKP KKVAAPQENG APNKPAPRPR GPRKTGDAPQ 240
QCYRWGAGGW QSACCTTSIS TYPLPMSTKR RGARIAGRKM SQGAFKKVLE KLAGEGYNLS 300
NPIDLKTFWA KHGTNKFVVI R*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP098331 | 1e-100 | FP098331.1 Phyllostachys edulis cDNA clone: bphylf058a01, full insert sequence. |
