PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG529500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family BBR-BPC
Protein Properties Length: 322aa    MW: 35316.8 Da    PI: 10.5434
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG529500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind74.44.7e-2312351193
            GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki...................rernlalsekkaavaerd............ 57 
                          mdddgs   rn+g+ye     k +lglqlmss++ +rd+k+                   +++++  +++++++++r             
  Pavir.9KG529500.1.p   1 MDDDGSLGiRNWGFYETV---KGDLGLQLMSSVPpDRDTKPllpngcnflqhhghhnaqhQHQHQHQHHPQHSHHPRSgggggssgapgg 87 
                          9*****999******988...9***********99***************9877655554333333444455555555************ PP

            GAGA_bind  58 .........maflqrdkalae...rnkalverdnkllalllvenslasalpvgvq.vl.sgtksidslqqlsepqledsavelreeekle 133
                                   m+f++++++l+    ++++ ++r++k+l+ l+v       +p   + v+ ++ +   ++   + p  +++  + ++ee + 
  Pavir.9KG529500.1.p  88 mpteppavhMDFARNEAWLHPsqhHHQHQHPRQQKVLHHLPVGPVGHVGHPGHGGhVVhHHPSGYGMMADAHGPPQQPQDPPPTKEESMP 177
                          ********************9444456678899999999999887765444433303303334455555544444444444446777799 PP

            GAGA_bind 134 alpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekks 193
                          ++pie+ +++ k+++ +kkrq++++pk++k kk+kk  ++++++ ++++  +r + ++k+
  Pavir.9KG529500.1.p 178 QPPIED-HPVLKNEPPVKKRQQGRQPKSPKPKKPKK-VAAPQENGAPNKPAPRPRGPRKT 235
                          999998.667777778888*****************.56777777777766888888876 PP
2GAGA_bind198.11e-60238321218301
            GAGA_bind 218 alrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          a++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+lsnp+DLk++WAkHGtnkfv ir
  Pavir.9KG529500.1.p 238 APQQCYRWGAGGWQSACCTTSISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLSNPIDLKTFWAKHGTNKFVVIR 321
                          69********************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.2E-311236IPR010409GAGA-binding transcriptional activator
SMARTSM012261.7E-1411321IPR010409GAGA-binding transcriptional activator
PfamPF062171.6E-59238321IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDDDGSLGIR NWGFYETVKG DLGLQLMSSV PPDRDTKPLL PNGCNFLQHH GHHNAQHQHQ  60
HQHQHHPQHS HHPRSGGGGG SSGAPGGMPT EPPAVHMDFA RNEAWLHPSQ HHHQHQHPRQ  120
QKVLHHLPVG PVGHVGHPGH GGHVVHHHPS GYGMMADAHG PPQQPQDPPP TKEESMPQPP  180
IEDHPVLKNE PPVKKRQQGR QPKSPKPKKP KKVAAPQENG APNKPAPRPR GPRKTGDAPQ  240
QCYRWGAGGW QSACCTTSIS TYPLPMSTKR RGARIAGRKM SQGAFKKVLE KLAGEGYNLS  300
NPIDLKTFWA KHGTNKFVVI R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206212PKKPKKV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.12471e-131callus| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG529500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0983311e-100FP098331.1 Phyllostachys edulis cDNA clone: bphylf058a01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985070.11e-138protein Barley B recombinant
RefseqXP_004985071.11e-138protein Barley B recombinant
RefseqXP_022679250.11e-138protein Barley B recombinant
SwissprotQ8GUC31e-121BBR_HORVU; Protein Barley B recombinant
TrEMBLA0A0A9EK971e-138A0A0A9EK97_ARUDO; Uncharacterized protein
STRINGPavir.Ib00892.1.p1e-157(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.32e-47basic pentacysteine 2