PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG525300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

M-type_MADS

Protein Properties

Length: 377aa MW: 40841.7 Da PI: 11.8326

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG525300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	21.5	3e-07	205	233	12	40
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviif 40 tf +R++ K A EL LC+++va++++ Pavir.9KG525300.1.p 205 TFGRRKEAFKKRARELFMLCGVDVALVVA 233 999***999**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.951	205	232	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-7	205	234	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-7	205	238	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MAGLGDTTHE GSSSEKQFIR RPAQEPSDAR PHMIVQQKHD ERVSSKQDEE VRQLCVGTWI 60 TSRHRRTQRP SSGGAWKETR RTTHPDSRAA HADARGVRLI TKGVRRVGAN SSRFERHALT 120 VDQRDGIWAW SVVACRRASG GARPRTDQTH RRRTSPGHRR RSSPTSAAPP ADSSFLPTTA 180 APPAPVAPTD TPSFLPCPGG GDDGTFGRRK EAFKKRAREL FMLCGVDVAL VVALGDGDAA 240 SREGVLARYR ALGVEVRTAR VHRAYLHAVA KLGKAQAELA RVRQGGPDAL ACWDKELDGS 300 PRRRGHGGCS TPSTPQCGPR RTGGGRGAAV AGRPRRRGRG RRPAQGREGG RAPGEAAPPC 360 RRARRREEEG DEIGER*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MAGLGDTTHE GSSSEKQFIR RPAQEPSDAR PHMIVQQKHD ERVSSKQDEE VRQLCVGTWI  60
TSRHRRTQRP SSGGAWKETR RTTHPDSRAA HADARGVRLI TKGVRRVGAN SSRFERHALT  120
VDQRDGIWAW SVVACRRASG GARPRTDQTH RRRTSPGHRR RSSPTSAAPP ADSSFLPTTA  180
APPAPVAPTD TPSFLPCPGG GDDGTFGRRK EAFKKRAREL FMLCGVDVAL VVALGDGDAA  240
SREGVLARYR ALGVEVRTAR VHRAYLHAVA KLGKAQAELA RVRQGGPDAL ACWDKELDGS  300
PRRRGHGGCS TPSTPQCGPR RTGGGRGAAV AGRPRRRGRG RRPAQGREGG RAPGEAAPPC  360
RRARRREEEG DEIGER*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG525300.1.p

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4572	29	60

Link Out ? help Back to Top
Phytozome	Pavir.9KG525300.1.p