PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HB-other

Protein Properties

Length: 1163aa MW: 130142 Da PI: 6.8955

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG524200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.6	5.2e-14	20	72	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ +++q++ Le+++ +yp+ ee+ + A+ +gLt +qV++WF+ rR ke++ Pavir.9KG524200.1.p 20 TKKSPQQIQMLEKFYSDVQYPKPEEMGQYATCVGLTYNQVRIWFKERRRKERR 72 66799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-14	8	73	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.641	13	73	IPR001356	Homeobox domain
SMART	SM00389	6.4E-14	15	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.11E-13	16	75	IPR009057	Homeodomain-like
Pfam	PF00046	2.6E-11	20	72	IPR001356	Homeobox domain
CDD	cd00086	1.33E-7	20	63	No hit	No description
PROSITE profile	PS50827	10.025	381	440	IPR018501	DDT domain
SMART	SM00571	1.4E-5	381	440	IPR018501	DDT domain
Pfam	PF02791	3.2E-7	383	435	IPR018501	DDT domain
Pfam	PF15612	2.9E-5	663	691	IPR028942	WHIM1 domain
Pfam	PF15613	2.3E-11	783	854	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1163 aa Download sequence Send to blast
MPHAQMMTNS PGAKRENAGT KKSPQQIQML EKFYSDVQYP KPEEMGQYAT CVGLTYNQVR 60 IWFKERRRKE RRNMEAIGSR MERQLSARSS GIISSSSSSS CDQDPMYGTS CSRPEFGSRS 120 TSIVGEESTV RSQILFPKDY ILRKIFRKDG PPLGSEFDPL PQSERDRIRD TTCHHSSQNQ 180 RAVKKRKIMG STSQRSDVPY EDTVPVRKHG IGKGLMTVLH AMYSHNVECQ SGPTFIDETG 240 CLRSLRPFDD CDGLEDNGKT TQNQGIVQKK VDKRNKPPEN KRKVPYKRVT SPKEHPPMDC 300 HLSVDKSESS EVLTELVTLV DDEELELSEL QAGPNPLRCS AHLTSSGRHG CPLCKDLLAK 360 FPPQSVKMKQ PFCAKPWDSS PEMVKKLFQV VRFVYTHFGS VDVHPFTFDE FAQAFHDKDS 420 FLLGEVHIGL LKLLLLNAEM CSGGIFAPRS SKDCRFLSFL NFVSEQEFDV NFWIRSLNSL 480 TWVEILRQVL VASGFGSKQH MLNRDFFNKE KNQMVKYGLR PRTLKGELFA LLSKAGSGGL 540 KVSVLAKSSE IVDLNISGTL ELEQLICLTL SSDITLFEKI APSAYRLRVD PQIKGKEDAK 600 SDSEESGSVD DDEDASSSDD ESSGSQKMKL LEHDNRIAPR KKQKNTIASP NKCSEIDESY 660 PGERWLLGLM EGEYSDLSID EKLDCLVALI DIVSGAGSVP RLEEPQRVSH NIPRVQPHQS 720 GGKIKKSTKN LYQSSDESLN GPGNLYSLDC SQQGRLSSRR NQSHIIDSGR NDLSGVAHEP 780 QVVLLGSDRR YNNYWLFLGP CRADDPGHRR IYFESSEDGH WEVVDSPQEL LSLLSVLDSR 840 GSREAHLLAS MEKRQACLFE AMKKHAEGGN AVGLAASSDS FRSETSIGDG ASPKTSSVSG 900 SSSVSSDVES ASVPTDLEDS NLDSSVAIVI ENGRRGDERI LMWDRSQAFD KWIWTSFYSA 960 LTAVKCGKKS FKESLARCES CHDLYWRDER HCRICHSTFE VGFDLEERYA VHVATCREPE 1020 DAHEVPNHKV LPSQLQALKA AIHAIEASMP EVAFTGPWMK SAHKLWVKRL RRTSSLPELL 1080 QVLVDFVGAM DEDWLYKSSA SVTFSSYLND ITVYFQTMPQ TTSAVALWVV KLDALIAPYV 1140 DKADTSRAIK EPAQDHRRVQ GS*

Sequence ? help Back to Top

Protein Sequence Length: 1163 aa Download sequence Send to blast

MPHAQMMTNS PGAKRENAGT KKSPQQIQML EKFYSDVQYP KPEEMGQYAT CVGLTYNQVR  60
IWFKERRRKE RRNMEAIGSR MERQLSARSS GIISSSSSSS CDQDPMYGTS CSRPEFGSRS  120
TSIVGEESTV RSQILFPKDY ILRKIFRKDG PPLGSEFDPL PQSERDRIRD TTCHHSSQNQ  180
RAVKKRKIMG STSQRSDVPY EDTVPVRKHG IGKGLMTVLH AMYSHNVECQ SGPTFIDETG  240
CLRSLRPFDD CDGLEDNGKT TQNQGIVQKK VDKRNKPPEN KRKVPYKRVT SPKEHPPMDC  300
HLSVDKSESS EVLTELVTLV DDEELELSEL QAGPNPLRCS AHLTSSGRHG CPLCKDLLAK  360
FPPQSVKMKQ PFCAKPWDSS PEMVKKLFQV VRFVYTHFGS VDVHPFTFDE FAQAFHDKDS  420
FLLGEVHIGL LKLLLLNAEM CSGGIFAPRS SKDCRFLSFL NFVSEQEFDV NFWIRSLNSL  480
TWVEILRQVL VASGFGSKQH MLNRDFFNKE KNQMVKYGLR PRTLKGELFA LLSKAGSGGL  540
KVSVLAKSSE IVDLNISGTL ELEQLICLTL SSDITLFEKI APSAYRLRVD PQIKGKEDAK  600
SDSEESGSVD DDEDASSSDD ESSGSQKMKL LEHDNRIAPR KKQKNTIASP NKCSEIDESY  660
PGERWLLGLM EGEYSDLSID EKLDCLVALI DIVSGAGSVP RLEEPQRVSH NIPRVQPHQS  720
GGKIKKSTKN LYQSSDESLN GPGNLYSLDC SQQGRLSSRR NQSHIIDSGR NDLSGVAHEP  780
QVVLLGSDRR YNNYWLFLGP CRADDPGHRR IYFESSEDGH WEVVDSPQEL LSLLSVLDSR  840
GSREAHLLAS MEKRQACLFE AMKKHAEGGN AVGLAASSDS FRSETSIGDG ASPKTSSVSG  900
SSSVSSDVES ASVPTDLEDS NLDSSVAIVI ENGRRGDERI LMWDRSQAFD KWIWTSFYSA  960
LTAVKCGKKS FKESLARCES CHDLYWRDER HCRICHSTFE VGFDLEERYA VHVATCREPE  1020
DAHEVPNHKV LPSQLQALKA AIHAIEASMP EVAFTGPWMK SAHKLWVKRL RRTSSLPELL  1080
QVLVDFVGAM DEDWLYKSSA SVTFSSYLND ITVYFQTMPQ TTSAVALWVV KLDALIAPYV  1140
DKADTSRAIK EPAQDHRRVQ GS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.16730	0.0	callus\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG524200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793779.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A3L6TQS0	0.0	A0A3L6TQS0_PANMI; Uncharacterized protein
STRING	Pavir.Ib01030.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-143	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Pavir.9KG524200.1.p