PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG520500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 238aa    MW: 24701.3 Da    PI: 5.6745
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG520500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002382104123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C + F ++  L  H++ H
  Pavir.9KG520500.1.p  82 FTCNYCQRKFFSSQALGGHQNAH 104
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-679109No hitNo description
PROSITE profilePS5015711.32382109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MNSKEMCQEP CDELSEISSQ AASNTEASNS SGRVSLDLLL TVAAAAAAES STTDNSNGSS  60
GGGGAQANAA AAVAAREPSR VFTCNYCQRK FFSSQALGGH QNAHRRERTL ARRALRLDAA  120
APYGYYADVA SLPLYGSGMY PIGIQAHASP AVRPRPEQQQ QQQQRHDAAA ARADELKPAR  180
GLLSPMPFFV GDDEVSFGWP GSFRPTAAAA PAGGAAFISA DAGAVLAGEE LDLTLRL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.205380.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG520500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849471e-134KF184947.1 Saccharum hybrid cultivar R570 clone BAC 230N09 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797778.11e-119zinc finger protein 4-like
RefseqXP_025797779.11e-119zinc finger protein 4-like
TrEMBLA0A2T7CF721e-118A0A2T7CF72_9POAL; Uncharacterized protein
STRINGPavir.Ib00997.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-13zinc finger protein 4