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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG508600.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 450aa MW: 48694.2 Da PI: 7.637 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.8 | 4.6e-26 | 49 | 117 | 2 | 70 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W ++e+l+Li++rrem+ +++++k++k+lWe++s++mr++gf rsp++C++kw+nl k++kk + +++ Pavir.9KG508600.3.p 49 WVRDETLCLIALRREMDAHFNTSKSNKHLWEAISARMRDQGFDRSPTMCTDKWRNLLKEFKKARSHARH 117 ***************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.316 | 41 | 105 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-4 | 42 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-5 | 45 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 9.56E-28 | 47 | 112 | No hit | No description |
Pfam | PF13837 | 1.2E-17 | 48 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MLLSGPPAAP TPPLLLPESS GEDGGHDSSS RAAAAAAAGS APKRRAETWV RDETLCLIAL 60 RREMDAHFNT SKSNKHLWEA ISARMRDQGF DRSPTMCTDK WRNLLKEFKK ARSHARHNAG 120 GGGGGAGGSG NAKMAYYKEI DDLLKRRGKE SGSGGCVASG SGAGKSPTSN SKIESYLQFT 180 TDNGFEDANI PFGPVEANGR SILSIDDRLE DVRHPLPLTA ADAVATNGVN PWNWRDTSTN 240 ASQVDEGALG EGLLPPADLA AGSSSLAIIT NLGPGSARSR HFLELSTKRR VPDFARSGQH 300 TARSSGGGDN QGTFGGRVIL VKWGDYTKRI GIDGTPEAIK EAIKSAFGLR TRRAFWLEDE 360 DEVVRTLDRD MPIGAYTLHL DDGVTIKLCN ANRMQTPEDK TFYTEEDFRD FLARRGWTFL 420 REYGGYRNVE SLDDLRRGAI YQGMRSLGD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 2e-38 | 43 | 139 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1811 | 0.0 | callus| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG508600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055522 | 0.0 | BT055522.1 Zea mays full-length cDNA clone ZM_BFc0047D18 mRNA, complete cds. | |||
GenBank | KJ727951 | 0.0 | KJ727951.1 Zea mays clone pUT6049 trihelix transcription factor (THX25) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794722.1 | 0.0 | trihelix transcription factor GT-4-like isoform X1 | ||||
Swissprot | Q9FX53 | 3e-70 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A3L6S8N5 | 0.0 | A0A3L6S8N5_PANMI; Trihelix transcription factor | ||||
STRING | Pavir.Ib01088.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.3 | 1e-61 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG508600.3.p |
Publications ? help Back to Top | |||
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