PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG503000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 444aa    MW: 46364.7 Da    PI: 9.0094
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG503000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017202225123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          ++C+ Cg++  r+ +L+ H+ + H
  Pavir.9KG503000.1.p 202 FPCKVCGEVLGRPQLLELHQAMkH 225
                          89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280204225IPR007087Zinc finger, C2H2
SuperFamilySSF563991.55E-11227277No hitNo description
Gene3DG3DSA:3.90.228.102.9E-8227441IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563991.55E-11304442No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MASGGGGGSS LLRGFLSLFF LLFLHIGHAG CCFSPGSAAR AREEDEAADA EDGGKVGGGG  60
GGSNKRRKIS PLIFSPAASS SAVTNGSARA RRGHASSVAA SLRFYLHRIF SSSGAKDGAV  120
AGREEEEAAA TTVSSPLARS LPPQASASVV LSTPSSPCAS SPFMSPLSVR SLSATPVPSS  180
PQKLLQAGRQ SSRSFAARGD VFPCKVCGEV LGRPQLLELH QAMKHSLSEL THLDSSMNII  240
RMIFLAGWKP AASGATEAPA VRRILRIHHN PRALARFEEY RDLVRARAAR RRGEGGGAAV  300
VEEERCVADG NERLRFHCST MLCSLGGGGA CGSPYCCVCS TLRQGFAGKQ ADVDGIATYA  360
SAWAAHASLP EDVEREFAFL QVRRAMLVCR VVAGRVGRGA ADDKVAYDSM VPARAGAGGD  420
DVELLVFNPR AVLPCFVILY SSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15260GGKVGGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.200990.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG503000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2318150.0AC231815.1 Oryza minuta clone OM__Ba0073C01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313429.10.0uncharacterized protein LOC8054291
TrEMBLA0A1E5UPY00.0A0A1E5UPY0_9POAL; Uncharacterized protein
STRINGPavir.J37415.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-42C2H2 family protein