PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG491100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Dof | ||||||||
Protein Properties | Length: 383aa MW: 38924.3 Da PI: 9.9952 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.5 | 1.7e-39 | 85 | 145 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt+GG+lrnvPvGgg+r+nk+ss Pavir.9KG491100.1.p 85 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGTLRNVPVGGGCRRNKRSS 145 67899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-31 | 69 | 134 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-33 | 88 | 143 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.767 | 89 | 143 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 91 | 127 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MVFPSVPAYL DPPNWNNQQQ GQQPRASGGG DAPAPLLPVG PPAPAAAPDA SGLPSSSSAA 60 SAAMAAHARP NSMAERARLA RMPQPEPALK CPRCDSTNTK FCYYNNYSLS QPRHFCKACR 120 RYWTRGGTLR NVPVGGGCRR NKRSSKSSAG GGGGASSSSS KPSSSARQLT AGPSSMPSSS 180 TGATGAIIPP GLGSFSHHLP FLGSMHQPGP NLGLAFSAGL PPLGLQHMDT VDQFPVASGG 240 GATIGASLEQ WRVQQQPQQQ FPFLTGGGIL DLPPASMYQQ LGLDANRGGS GSAAAAAFTL 300 GQTSAATARQ EGSMKVEESN KGQDMSLLQR QYMAALRHGS LWDGNAGSSG GDGAGNGGSS 360 WPMNIPGFNS SSTGGGNGSG ML* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.13028 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG491100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791451.1 | 1e-179 | dof zinc finger protein DOF5.1-like isoform X2 | ||||
TrEMBL | A0A2S3IRW0 | 1e-178 | A0A2S3IRW0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib01257.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12301 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.3 | 2e-36 | OBF-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG491100.1.p |