PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG489300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 735aa    MW: 84523 Da    PI: 5.6121
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG489300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.43.1e-2098223190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....................................tekerr 53 
                          +fYn+YA+++GFs+r+s+s+ s  ++e  k  fvC+keg+  + k+                                       +k+r+
  Pavir.9KG489300.1.p  98 EFYNSYASRIGFSIRTSTSRLSGLTREQHKILFVCNKEGHGGKVKEGnpgdesddsddgggvngtennnkgdgeedaekikrldGTKKRK 187
                          6*********************99999*************999988899**********************************9888888 PP

                 FAR1  54 traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          ++  ++t+Cka+++vk+   ++w+v+ +  +HnH+l+
  Pavir.9KG489300.1.p 188 RERMHHTDCKARMVVKLI-ADRWHVIFFAPDHNHDLV 223
                          99999*************.9**************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1798223IPR004330FAR1 DNA binding domain
PfamPF105516.1E-23303377IPR018289MULE transposase domain
PROSITE profilePS509669.52558594IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MDLNELPPDF DYDFLDCSEA NPSYCTQAVE ASGQGAVHDI VQFADEQDVP ALDSIEAAVG  60
CCNLDENPED VQTIADNTQG VAVPYTGQIF SSKQEVREFY NSYASRIGFS IRTSTSRLSG  120
LTREQHKILF VCNKEGHGGK VKEGNPGDES DDSDDGGGVN GTENNNKGDG EEDAEKIKRL  180
DGTKKRKRER MHHTDCKARM VVKLIADRWH VIFFAPDHNH DLVVKPSMKK FRRSHKGIPK  240
EEMDFIALLH GCNLSTGRIM QLMNEFYGFA QLVLHEGKDH KVESLFWVDG ESRHAYIESY  300
HDCVSFDATY MTNMYEMPFT PFIWINRHGQ SFMLGCAFLR NEKMPSYTWL FETFLEAMKG  360
KPPLSIITDQ DAAMRSPVLG EDAELEEDFK ECMNHTVTPD EFEVAWAVMV AKYGLEDNVH  420
FQHLYAIRSS FVPAYYMHCF FPFLQSTQKS EGFNAVLKKY VNLNLSVLHF VRQYQKIQDK  480
CLVTQDRQDF KTDDRNQRRW SKYPIERHAS TVYTKNLFYR FSKEFEKTTE YDVKPEGQFQ  540
FWLVPNNNYV YGYSKRRYLV TAIEDEGSYY CECSKFDRDG MICCHIMKIL TRLGVKEIPE  600
RYILKRWTQD VVSENGNANS NAHLPSDFIA RGMPLNNQKT LWFTNLSTAF AALAVDGCVS  660
KETYSLMDSH IKMMRSELDD IKKGGSLTGT RCDDGDCGQP TEVESQRSQE RKKAEKKYEC  720
WSKEEEQVQY LQVN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178186RLDGTKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG489300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311908.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1W0VY600.0A0A1W0VY60_SORBI; Uncharacterized protein (Fragment)
STRINGPavir.Fa02303.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-67FAR1-related sequence 5