PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.9KG469000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 329aa MW: 35849 Da PI: 10.3153

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG469000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	101	118	3	20
ETTTTEEESSHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHi 20 C Cg++F+ ++ L rH Pavir.9KG469000.1.p 101 CRVCGRRFRARDVLLRHF 118 *****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.845	99	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	101	122	IPR007087	Zinc finger, C2H2
CDD	cd06167	0.00139	197	243	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MFPPLSHLLR RRVLAAAPEL LAPLFFRSHS TVAAPAARKP TTVVAVLWDL AASRPPTTLP 60 LYDAAVRLHL AATSLGRLRL SAAFVHPTHR LPPPAATTHL CRVCGRRFRA RDVLLRHFDA 120 IHAREHAKRL ARIDSSRGDR RVRLAAALSL KLSKYEKAAR ELTAGADTAA TPADELGRAG 180 IRVALASTPA ASLRERAQQV LDEGSVGCLM LVSGKADLAS LLRVARERGV RSVVVGGESG 240 LARWADVGFN WADIISGKAR NAAPSVSVKW QDMDVLKGLE WRYEEVDDEE EMVFEDSDGN 300 GVEELARRAK GKPWWKLDFD DENSNVSG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG469000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823075.1	0.0	uncharacterized protein LOC112898963
TrEMBL	A0A3L6PUC9	0.0	A0A3L6PUC9_PANMI; Uncharacterized protein
STRING	Pavir.Ib03861.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12234	20	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	4e-37	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG469000.1.p