PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG469000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 329aa    MW: 35849 Da    PI: 10.3153
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG469000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034101118320
                          ETTTTEEESSHHHHHHHH CS
              zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                          C  Cg++F+ ++ L rH 
  Pavir.9KG469000.1.p 101 CRVCGRRFRARDVLLRHF 118
                          *****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.84599127IPR007087Zinc finger, C2H2
PROSITE patternPS000280101122IPR007087Zinc finger, C2H2
CDDcd061670.00139197243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MFPPLSHLLR RRVLAAAPEL LAPLFFRSHS TVAAPAARKP TTVVAVLWDL AASRPPTTLP  60
LYDAAVRLHL AATSLGRLRL SAAFVHPTHR LPPPAATTHL CRVCGRRFRA RDVLLRHFDA  120
IHAREHAKRL ARIDSSRGDR RVRLAAALSL KLSKYEKAAR ELTAGADTAA TPADELGRAG  180
IRVALASTPA ASLRERAQQV LDEGSVGCLM LVSGKADLAS LLRVARERGV RSVVVGGESG  240
LARWADVGFN WADIISGKAR NAAPSVSVKW QDMDVLKGLE WRYEEVDDEE EMVFEDSDGN  300
GVEELARRAK GKPWWKLDFD DENSNVSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG469000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823075.10.0uncharacterized protein LOC112898963
TrEMBLA0A3L6PUC90.0A0A3L6PUC9_PANMI; Uncharacterized protein
STRINGPavir.Ib03861.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.14e-37C2H2 family protein