PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG433300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 340aa    MW: 34725.9 Da    PI: 6.7859
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG433300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.26e-27126186259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg+ WrKYGqKe+++s++prsYYrCt++   gC++k++v+rs+ dp+  ++tY geH+++
  Pavir.9KG433300.1.p 126 EDGHVWRKYGQKEIQNSPYPRSYYRCTHSssqGCNAKRQVQRSEADPSKHVVTYYGEHTCR 186
                          8**************************998889*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.43120188IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-27120188IPR003657WRKY domain
SuperFamilySSF1182901.12E-25123188IPR003657WRKY domain
SMARTSM007745.3E-36125187IPR003657WRKY domain
PfamPF031064.4E-25126186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MASSGGDVPA ERAAAAANDL VEARDGAASL RTFLLELDDQ RAPWAQRVVD AVLSRLSSAM  60
SALDVGGAAT GGGRSPATGS GSGGASRPQQ SVSYSSRNTK DKKRSLSRSF TRSQRPSDKK  120
ITTTLEDGHV WRKYGQKEIQ NSPYPRSYYR CTHSSSQGCN AKRQVQRSEA DPSKHVVTYY  180
GEHTCRDPST IPLVVHAAGA APDDRANNLI SFGHSGASDS SAAATGAYSS SQYLAMGGRS  240
TAGDQLSTSW CTSDDMFSSS AGSFMQVDEL ISAVVGSAGV TSTATAGSAA LDRGGLGGMA  300
GGGGGNASFP PSPNGLAGFV VGSLGSIGGD DDDLFSMDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-25121186469OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG433300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796867.10.0WRKY transcription factor 55-like
TrEMBLA0A2T7CD130.0A0A2T7CD13_9POAL; Uncharacterized protein
STRINGPavir.Ib01568.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-23WRKY DNA-binding protein 70