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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.9KG411800.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
GeBP |
Protein Properties |
Length: 361aa MW: 38711.6 Da PI: 6.0061 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.9KG411800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 104.1 | 1.1e-32 | 56 | 155 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqk 87
lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++k+qlveKirrLK+K++++v++ + g ++f+++h+q
Pavir.9KG411800.1.p 56 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLHTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAAFTFRSPHEQA 145
79*************************8867778***************************************8889************* PP
DUF573 88 ifelskkiWg 97
ife+++ iW+
Pavir.9KG411800.1.p 146 IFEIARTIWR 155
*********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MVSSSFPDAD AYGNGDSDDL DFPVDPHPTP VFSSPAAAPA SASAAPPAGA GERRPLFQRL 60 WTDEDEIVIL RAFAEFTAQR GTSFASHQYD TTPFYEDMRR RLHTGFTKNQ LVEKIRRLKR 120 KYRNCVERLR VAGAAFTFRS PHEQAIFEIA RTIWRPDSDK HGRDSDDEAA ANAHDGPLAL 180 DANGGDSTKS PTSRPRRGGR RRRTADFPAD AAAETLALPP PPMPVMPEDA LPSFPAAGMP 240 AMDAGVGVGS ISMDPAAGLP AAMSAAVTGG STAENPILAA LFKEMVRAML SIGGGVTAAP 300 LGLEPPPAIA GMPMEGEKWR QQRIRELEVY LRRIDLLQDQ ARAALEELRS APQGRGGMNT 360 *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT064599 | 1e-176 | BT064599.1 Zea mays full-length cDNA clone ZM_BFc0188M08 mRNA, complete cds. |
GenBank | EU972116 | 1e-176 | EU972116.1 Zea mays clone 375368 hypothetical protein mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G04930.2 | 2e-32 | DNA-binding storekeeper protein-related transcriptional regulator |