PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG382200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 411aa    MW: 44719.4 Da    PI: 6.7361
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG382200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011264286123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+Cp Cg+ F +   L  H  +H
  Pavir.9KG382200.1.p 264 YECPGCGRAFQSYQALGGHRASH 286
                          99********9999888888777 PP
2zf-C2H210.80.0016346368123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C k+F +   L  H r+H
  Pavir.9KG382200.1.p 346 FECPICFKVFGSGQALGGHKRSH 368
                          89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.71E-51440No hitNo description
PfamPF139128.3E-51638IPR007087Zinc finger, C2H2
SMARTSM003550.61638IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4321643IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
PfamPF139128.2E-11263288IPR007087Zinc finger, C2H2
SuperFamilySSF576677.1E-7263286No hitNo description
PROSITE profilePS5015710.492264291IPR007087Zinc finger, C2H2
SMARTSM003550.21264286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280266286IPR007087Zinc finger, C2H2
SuperFamilySSF576677.1E-7341368No hitNo description
PfamPF139122.4E-11345369IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889346369IPR007087Zinc finger, C2H2
SMARTSM003550.15346368IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280348368IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGDAAVLGSR SSATRHSCKV CRKGFPCGRS LGGHMRSHSL AEMETAVEDD ADGNGEEQQQ  60
QQRRGPDCLM VPGAGGYGLR ENPKKTRRLS SGLDGGDESG GRQDECGRGD RGELLPEVSH  120
ERRHASLGAV MEVEVEAERE QEDAPTEPAA GLMPAPRRRR RSMRVPAPEP PPAFDKEPED  180
VALCLIMLSR DILHRRDSTA EYSPEKDYRR RRDHHHHHHH HDTDSDDASA LFQYTDVEIS  240
TKTNNKRKPN NNRSLAGDEK RARYECPGCG RAFQSYQALG GHRASHKRIN SNCSIAKVAP  300
DQAELSVETA NASFNTASPD ADHATDVAHS TAVVALKAKP HKAIRFECPI CFKVFGSGQA  360
LGGHKRSHSI AGELYERAHA DGDAGIDEAK QPMVADGFLD LNLPAPGAED *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG382200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792036.10.0zinc finger protein ZAT4-like
TrEMBLA0A3L6TTF00.0A0A3L6TTF0_PANMI; Zinc finger protein ZAT4-like
STRINGPavir.Ib02073.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-23C2H2-like zinc finger protein