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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG373400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 207aa MW: 20852.4 Da PI: 8.7153 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F ++ L H +H Pavir.9KG373400.1.p 56 FRCSVCGKAFASHQALGGHKASH 78 89************999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.1E-11 | 55 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.092 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.4E-9 | 56 | 78 | No hit | No description |
SMART | SM00355 | 0.013 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.9E-4 | 56 | 79 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.4E-9 | 109 | 136 | No hit | No description |
Pfam | PF13912 | 4.7E-10 | 114 | 137 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.099 | 114 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MAPISHDDDY VSLCLMALAA AGGGAQATAP RQHTAAAAAA ACWTTAAAQQ ERELRFRCSV 60 CGKAFASHQA LGGHKASHRK PPPPPALLQV QAAAAAAAAS ASAGDAASSG GGQHRCSVCH 120 RGFATGQALG GHKRCHYWDG LSVSVTASAS GSGSSIKDFD LNMMPAAAAA AAGARRWGEE 180 EEVQSPLPLK KRRLSSGPSL DLSLTI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG373400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ245451 | 7e-40 | DQ245451.1 Zea mays clone 15722 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182764.1 | 5e-72 | zinc finger protein ZAT6-like | ||||
Swissprot | Q75KE5 | 5e-53 | ZFP36_ORYSJ; Zinc finger protein 36 | ||||
TrEMBL | A0A3L6TSF6 | 1e-80 | A0A3L6TSF6_PANMI; Zinc finger protein 1 | ||||
STRING | Pavir.Ib02022.1.p | 6e-81 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3412 | 32 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19580.2 | 7e-20 | zinc-finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG373400.1.p |
Publications ? help Back to Top | |||
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