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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.9KG373200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C2H2 |
| Protein Properties |
Length: 224aa MW: 23422.3 Da PI: 10.8999 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9KG373200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.1 | 0.00029 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C Cgk F + L H ++H
Pavir.9KG373200.1.p 73 FRCAVCGKAFASYQALGGHKSSH 95
89**************9999995 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MMHSSLRVVR QTTRWSCRRR GSARRTTSPS ASPGTRGTGL TAAGFGRHGE KTFPLPLAAA 60
PPALVVAQED VRFRCAVCGK AFASYQALGG HKSSHHKPPT ADQYAAAAAA RAAASSTADS 120
EETTTSSGGP AAGGPHRCTI CRRGFATGQA LGGHKRCHYW DGSSVSVSLS ASASGSGTGS 180
SAVTIRNFDL NLMPLPENAG MRRWVEEEEV QSPLPIKKRR MSD*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP094070 | 8e-40 | FP094070.1 Phyllostachys edulis cDNA clone: bphyem106f16, full insert sequence. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Yilmaz A, et al.
GRASSIUS: a platform for comparative regulatory genomics across the grasses.
Plant Physiol., 2009. 149(1): p. 171-80
[PMID:18987217] - Zhang H, et al.
A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
J. Exp. Bot., 2014. 65(20): p. 5795-809
[PMID:25071223] - Li W, et al.
A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
Cell, 2017. 170(1): p. 114-126.e15
[PMID:28666113]
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