PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG352900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 434aa    MW: 46299 Da    PI: 7.7114
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG352900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.42.1e-17111363125
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee.v.ikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknratksgyWk 84 
                          +GfrF+P+  e  ++yL + ++g +++++    i+++d+y +eP +L ++++   ++ + +fF++ + +++    + +++ ra+ +g W+
  Pavir.9KG352900.1.p  11 RGFRFDPKPLEAATYYLPQLLAGAPMHEAVrPfIHHADVYACEPGELARQFRPlpRTGHRFFFTHCKLQQPhragKASKAARAAGAGSWH 100
                          7************************66533235**************86544433455889999988877744445668899999***** PP

                  NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125
                          ++   +++++ k+ +vg  + L +     + g  tdW+m+e
  Pavir.9KG352900.1.p 101 SQSV-TDIVDGKQVKVGEMRKLRYK----KGGAYTDWLMDE 136
                          9987.5666769999*********8....456789****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-188158IPR003441NAC domain
PROSITE profilePS5100520.6779159IPR003441NAC domain
PfamPF023654.8E-911136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MPSLGPEIFF RGFRFDPKPL EAATYYLPQL LAGAPMHEAV RPFIHHADVY ACEPGELARQ  60
FRPLPRTGHR FFFTHCKLQQ PHRAGKASKA ARAAGAGSWH SQSVTDIVDG KQVKVGEMRK  120
LRYKKGGAYT DWLMDESSCC LQDAIVGDRQ YVFCNIYVSP RAAPGSAAHQ ESAAFFAPPA  180
PVVIAQAPPP PPPKRPAPQV PEPPGPKWTR GTVVAPTPPV VQPAAGCTAY FAPPRPCVPN  240
SAVAPASTVS VIRSSPASAQ PPPPGPTRLA APPRRIPAPA PPQPKQQICL GGVAPLPTPS  300
MIRSLPASAQ PPVPAPTCLA ALSMRTPVPA PPTPPVVRAC NMPVQAPAHH CRPQPSEHTR  360
KKTRDPFEAA ALRDEAVESP AALQDDDFDE DDLVKALDEA VPTVEAEEDA PAYSTMTDDE  420
LEQHLLSLMD AIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG352900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827463.11e-145atherin-like
TrEMBLA0A2T8I7A80.0A0A2T8I7A8_9POAL; Uncharacterized protein
STRINGPavir.Ha01903.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.13e-07NAC domain containing protein 57